BAC Information

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BAC

Clone NameMSMg01-306P06
Chromosome6 (Build37)
Map Location 13,977,799 - 14,135,552
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306P06.T7 (MSMg01no306_p06.b1)MSMg01-306P06.TJ (MSMg01no306_p06.g1)
ACCAG431463AG431464
length744746
length of high quality
(start - end)		700 (45 - 744)671 (76 - 746)
definitionCHROMAT_FILE: MSMg01no306_p06.b1 PHD_FILE: MSMg01no306_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:52 2005CHROMAT_FILE: MSMg01no306_p06.g1 PHD_FILE: MSMg01no306_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,134,857 - 14,135,552)(13,977,799 - 13,978,469)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAAGTAACGGAAGAACAGTGTAGACAATTTCAGGTATTTTTCTA
TCTGCTTAAAAATCTTCAAAGGCATCCTTCCTTGTCTGAGTCAAGTTTGA
AGACCATCAAGTTTTCAAGGGATTTGATGACCTTACATAGACAGCTTTAT
TCCTACTCCTTTACCACACAGCCCTTCTGAACAGAGTGGGTCAAAATGTT
CCTGGTCTGTAATATATAATCTTTTACAAATCAGTGTTTTCTTCTTCATT
CTTTTGTCACCTCTGTAAATGTCACTAAGTCATTAAGGATTACTTAAAAG
TTAACTACTTGCTGGAGTTCAGTGACCAAAAGTAGTACAAACACATTGAG
ATGCCATATTCTTACTTATTACTTGATGACTCAGATGTATGGGCTTAAAA
CAGAGGTGCTGCCATAAAGTACACATATAGATCAAGGGAAGCTCTGAACA
TTTATCTCTGTAAAAGTGAGGACAAGTGCATAGTCAATGTTGGCCTTCAA
AGCTAACTGAAATATAAGACTTGGCATTCATCTGTGAGACCTGAGATTAA
CATCTAGCTTTAAGCTATCCCCGAGCATGTGATTTAGAAAGCCCATTTTT
CCTGATGTCCATTTCTTAAAATACTGTCCATAGTATTTGAATCTGAAAAT
ACACCCTCCTCAGATAATATACACAATTGTGGGATCAATAAACT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTGCGAACTGAGAAAATGGTGGT
TAGAAAGAGTTTCTAGAGCTTAAATTCACCTATGATAAGTGGGCCAAGTA
AGGACTTTGCTCTCTGCAGGAGACTTTGAGAGCCACTGCCTGAAGCTGTT
TTATTGCTCTACCATGGGTCAAGGAAACACTAAGAAACCCCTACAGTATG
TATAAATCCTGGCAAAGCACAGGCAAGGTTCTGATTTTGCTAGACTAGGC
ATTCCCGTTCAGTGTTTGGATTACACCGTCTTGATCACTTTGGAATATAT
TCACACTAAATAACCCTGGAGATTGATTAAAAGATTAAGCTTTTCCTCTC
TTAATTAATCTCAGCATCCACTTATTGCTTTATCTACTAAAAGCAATATG
ATTTGCTCAATCTACCAAAATATTTGCTCTAATCTAAAAATGAAGAGGTA
ATGAATTTAAGAATTTAGCTAGATTTCAAATTAACTTAATGCACCCTCCT
CCTTCACCAACCCCGTAGAAAAAAAGAGGCAGATACTGTAGCTTAGAATA
TATCATGTCATGAAGATGGAACAACATTTGCATAAATCCCAAGTGATTTA
CCACACAAAGAATCAGTATAATAAATCAGTCATATTTATTAGGAGAGTCA
CCTTGATTTTTAAATCTATCATAGATTTACAATATTGATATTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_p06.b1 MSMg01no306_p06.b1 CHROMAT_FILE:
MSMg01no306_p06.b1 PHD_FILE: MSMg01no306_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:52 2005
         (700 letters)



>mm_chr6_14134653_14135752
          Length = 1100

 Score = 1237 bits (640), Expect = 0.0
 Identities = 682/696 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataagtaacggaagaacagtgtagacaatttcaggtatttttctatctgctta 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattccataagtaatgcaagaacagtgtagacaatttcaggtatttttctatctgctta 841

                                                                       
Query: 65  aaaatcttcaaaggcatccttccttgtctgagtcaagtttgaagaccatcaagttttcaa 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaaatcttcaaaggcatcctaccttgtctgagtcaagtttgaagaccatcaagttttcaa 781

                                                                       
Query: 125 gggatttgatgaccttacatagacagctttattcctactcctttaccacacagcccttct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 780 gggatttgatgaccttacatagacagctttattcctactcctttaccacacagctcttct 721

                                                                       
Query: 185 gaacagagtgggtcaaaatgttcctggtctgtaatatataatcttttacaaatcagtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaacagagtgggtcaaaatgttcctggtctgtaatatataatcttttacaaatcagtgtt 661

                                                                       
Query: 245 ttcttcttcattcttttgtcacctctgtaaatgtcactaagtcattaaggattacttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttcttcttcattcttttgtcacctctgtaaatgtcactaagtcattaaggattacttaaa 601

                                                                       
Query: 305 agttaactacttgctggagttcagtgaccaaaagtagtacaaacacattgagatgccata 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 600 agttaactacttgctggagttcagtgaccaaaattagtacaaacacattgagatgtcata 541

                                                                       
Query: 365 ttcttacttattacttgatgactcagatgtatgggcttaaaacagaggtgctgccataaa 424
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 540 ttcttacttataacttgatgactcagatgtatgggcttaaaacaaaggtgctgccataaa 481

                                                                       
Query: 425 gtacacatatagatcaagggaagctctgaacatttatctctgtaaaagtgaggacaagtg 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 gtacacatatagatcaagggaagctctgaacatttatctctgtaaaagtgaggaaaagtg 421

                                                                       
Query: 485 catagtcaatgttggccttcaaagctaactgaaatataagacttggcattcatctgtgag 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct: 420 catagtcaatgttggccttcaaagctcactgaaatataagacttggcattcttctatgag 361

                                                                       
Query: 545 acctgagattaacatctagctttaagctatccccgagcatgtgatttagaaagcccattt 604
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 360 acctgagattaacatctagctttaagctatccccaagcatatgatttagaaagcccattt 301

                                                                       
Query: 605 ttcctgatgtccatttcttaaaatactgtccatagtatttgaatctgaaaatacaccctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcctgatgtccatttcttaaaatactgtccatagtatttgaatctgaaaatacaccctc 241

                                               
Query: 665 ctcagataatatacacaattgtgggatcaataaact 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctcagataatatacacaattgtgggatcaataaact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_p06.g1 MSMg01no306_p06.g1 CHROMAT_FILE:
MSMg01no306_p06.g1 PHD_FILE: MSMg01no306_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:52 2005
         (671 letters)



>mm_chr6_13977599_13978669
          Length = 1071

 Score = 1274 bits (659), Expect = 0.0
 Identities = 668/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgcgaactgagaaaatggtggttagaaagagtttctagagcttaaattcacctatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgcgaactgagaaaatggtggttagaaagagtttctagagcttaaattcacctatga 260

                                                                       
Query: 61  taagtgggccaagtaaggactttgctctctgcaggagactttgagagccactgcctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtgggccaagtaaggactttgctctctgcaggagactttgagagccactgcctgaag 320

                                                                       
Query: 121 ctgttttattgctctaccatgggtcaaggaaacactaagaaacccctacagtatgtataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttttattgctctaccatgggtcaaggaaacactaagaaacccctacagtatgtataa 380

                                                                       
Query: 181 atcctggcaaagcacaggcaaggttctgattttgctagactaggcattcccgttcagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctggcaaagcacaggcaaggttctgattttgctagactaggcattcccgttcagtgt 440

                                                                       
Query: 241 ttggattacaccgtcttgatcactttggaatatattcacactaaataaccctggagattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggattacaccgtcttgatcactttggaatatattcacactaaataaccctggagattg 500

                                                                       
Query: 301 attaaaagattaagcttttcctctcttaattaatctcagcatccacttattgctttatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaaagattaagcttttcctctcttaattaatctcagcatccacttattgctttatct 560

                                                                       
Query: 361 actaaaagcaatatgatttgctcaatctaccaaaatatttgctctaatctaaaaatgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actaaaagcaatatgatttgctcaatctaccaaaatatttgctctaatctaaaaatgaag 620

                                                                       
Query: 421 aggtaatgaatttaagaatttagctagatttcaaattaacttaatgcaccctcctccttc 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 aggtaatgaatttaagaatttagctagatttcaaattaacttaacgcaccctcctccttc 680

                                                                       
Query: 481 accaaccccgtagaaaaaaagaggcagatactgtagcttagaatatatcatgtcatgaag 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaaccccgtagaaaaaaaaaggcagatactgtagcttagaatatatcatgtcatgaag 740

                                                                       
Query: 541 atggaacaacatttgcataaatcccaagtgatttaccacacaaagaatcagtataataaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 atggaacaacatttgcataaatcccaagtgatttaccacacaaagaatcagaataataaa 800

                                                                       
Query: 601 tcagtcatatttattaggagagtcaccttgatttttaaatctatcatagatttacaatat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcagtcatatttattaggagagtcaccttgatttttaaatctatcatagatttacaatat 860

                      
Query: 661 tgatattcata 671
           |||||||||||
Sbjct: 861 tgatattcata 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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