Query= MSMg01no307_i22.b1 MSMg01no307_i22.b1 CHROMAT_FILE:
MSMg01no307_i22.b1 PHD_FILE: MSMg01no307_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:39 2005
(701 letters)
>mm_chr6_116306687_116307786
Length = 1100
Score = 890 bits (460), Expect = 0.0
Identities = 481/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 214 caaaaaaaatagcaaaaatggacagcttgaaaaagaataaaagccaataatatggctctg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 caaaaaaaatagcaaaaatggacagcttgaaaaagaataaaagccaataatatggctctg 1041
Query: 274 tgggataaggtacttactgccaagcctaaagacttgagttccaatcccccaacccacatg 333
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1040 tgggataaggtacttactgccaagcctaaagacttgagttccagtcccccaacccacacg 981
Query: 334 gatggaaggaaagaactgattccatgaactgtcctgactccacatatgtgatatggcata 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 980 gatggaaggaaagaactgattccatgaactgtcctgactccacatatgtgatatggcaca 921
Query: 394 catacatatctacatacacaaaataaacaaatatgtgtaattttaaacaaaaaacccccc 453
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 920 catacatatatacatacacaaaataaacaaatatgtgtaattttaaacaaaaaa-ccccc 862
Query: 454 actacttctaaaaattaataagaatgattaagacaaagctaaatgaatgaaacagattaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 actacttctaaaaattaataagaatgattaagacaaagctaaatgaatgaaacagattaa 802
Query: 514 agctaaaagaccactaaagaattttttcatcattaagaaatgaaaaatattaaagagaca 573
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 agctaaaagaccactaaagaatttcttcatcattaagaaatgaaaaatattaaagagaca 742
Query: 574 caagcagacaagaataaaatggcacggactccctgaagactattcacatcccagaaaaca 633
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 caagcagacaagaataaaatggcacagactccctgaagactattcacatcccagaaaaca 682
Query: 634 gagaacataagttacatgtgaggagataaaagttgggcattttcaaaactaaagggctaa 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaacataagttacatgtgaggagataaaagttgggcattttcaaaactaaagggctaa 622
Query: 694 aaagatgg 701
||||||||
Sbjct: 621 aaagatgg 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1100
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1090
Effective search space: 753190
Effective search space used: 753190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_i22.g1 MSMg01no307_i22.g1 CHROMAT_FILE:
MSMg01no307_i22.g1 PHD_FILE: MSMg01no307_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:39 2005
(338 letters)
>mm_chr6_116246773_116247510
Length = 738
Score = 572 bits (296), Expect = e-168
Identities = 321/338 (94%), Gaps = 14/338 (4%)
Strand = Plus / Plus
Query: 2 ctgtccggtccacactgacttcgaacatggagaaatcccttttctcctgcttcccttctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgtccggtccacactgacttcgaacatggagaaatcccttttctcctgcttcccttctt 261
Query: 62 aattccagcattggggagacagaggcagaaggattgctaaagcctcaaggccacactggc 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 aatcccagcattggggagacagaggcagaaggattgctaaagcctcaaggccaaactggc 321
Query: 122 ctacataattaactacacacaagtcaaggcagcataggagggagattgtggtccaaacct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctacataattaactacacacaagtcaaggcagcataggagggagattgtggtccaaacct 381
Query: 182 tttccctccaaagagataattcaaaaaatgaggtgaatttaaaaatagttttatgctcta 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttccctccaaaaagataattcaaaaaatgaggtgaatttaaaaatagttttatgctcta 441
Query: 242 aaatgtattcaataaaatattcctcttcgtatatatattccacaggagactgtggttttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatgtattcaataaaatattcctcttcgtatatatattccacaggagactgtggttttt 501
Query: 302 --------------gtgtgtgtgtgtgtgtgtgtgtgt 325
||||||||||||||||||||||||
Sbjct: 502 ttttttttttttttgtgtgtgtgtgtgtgtgtgtgtgt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
