Query= MSMg01no307_o22.b1 MSMg01no307_o22.b1 CHROMAT_FILE:
MSMg01no307_o22.b1 PHD_FILE: MSMg01no307_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:07 2005
(686 letters)
>mm_chr6_117792718_117793803
Length = 1086
Score = 1064 bits (550), Expect = 0.0
Identities = 575/584 (98%), Gaps = 3/584 (0%)
Strand = Plus / Minus
Query: 105 tcatactcggggttagagctcagagttcaaggttcattcagcctgagacaaccccaacat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tcatactcggggttagagctcagagttcaaggttcattcagcctgagacaaccccaacat 1027
Query: 165 cacctctatatcaaattgcttttccttttttctt--tttctcccttaagacagggtttct 222
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1026 cacctctatatcaaattgcttttccttttttctttctttctcccttaagacagggtttct 967
Query: 223 ctatatagccttggctgtgctagaactcattctacagaccaggctagcctctaactcaca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ctatatagccttggctgtgctagaactcattctacagaccaggctagcctctaactcaca 907
Query: 283 gatccatctgccttgtcctcctaagtgcggggattaaagacatgcaccaccactgcccgg 342
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 906 gatccgcctgcctcgtcctcctaagtgcggggattaaagacatgcaccaccactgtccgg 847
Query: 343 cttcaaactgttttcttgctttgttttgattatcatttccaatcccagcttgcaggcttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cttcaaactgttttcttgctttgttttgattatcatttccaatcccagcttgcaggcttt 787
Query: 403 ccctgcaaccagtagagcagtgagcttcaccaaatgaatgcatcttcttataggggctct 462
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccctgcaacctgtagagcagtgagcttcaccaaatgaatgcatcttcttataggggctct 727
Query: 463 gacgtcatcccagcaaccagctgactcactcactgaaaaaggctacattctgggcgtatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gacgtcatcccagcaaccagctgactcactcactgaaaaaggctacattctgggcgtatc 667
Query: 523 ttccatgacagtccagcagggtagctgttgggaacccaaacatgtccactcctgctcgct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttccatgacagtccagcagggtagctgttgggaacccaaacatgtccactcctgctcgct 607
Query: 583 gactttgatcaccgcctcttcatatgattcttccatgggctggtctggagtacctgaggg 642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 606 gactttgatcaccgcctcttcatatgattcttccatgggctggtctggagaacctgaggg 547
Query: 643 acagaaaaaaataaataaaccaaaccaaaaaaaaaaaaaaaaaa 686
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 546 acagaaaaaa-taaataaaccaaaccaaaaaaaaaaaaaaaaaa 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_o22.g1 MSMg01no307_o22.g1 CHROMAT_FILE:
MSMg01no307_o22.g1 PHD_FILE: MSMg01no307_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:07 2005
(658 letters)
>mm_chr6_117770775_117771826
Length = 1052
Score = 1125 bits (582), Expect = 0.0
Identities = 642/676 (94%), Gaps = 26/676 (3%)
Strand = Plus / Plus
Query: 1 ttctattccaaccatccaagctatgtgtgcatatactcggtcacatagaaaataatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttctattccaaccatccaagctatgtgtgcatatactcggtcacatagaaaataatatta 247
Query: 61 cttccatttggtgtgccaaattaaatgaaataggccacaatattatacttgtcatggttg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 248 cttccatttggtgtgccaaattaaatgaaataggccaaaatattatacttgtcatggttg 307
Query: 121 tcatgctgaagttggctggttttaatgaaataaaccaatgcagagtactgcagtctttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcatgctgaagttggctggttttaatgaaataaaccaatgcagagtactgcagtctttaa 367
Query: 181 cccagttcttgaagccatccacatcaccttgccaacagttacccaggcttgaagatcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cccagttcttgaagccatccacatcaccttgccaacagttacccaggcttgaagatcaga 427
Query: 241 gtcttcaccatgatttcattacagctacactcaagacaggtggcgcttacagagttccca 300
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 428 gtcttcaccatgatttcattacagctacactcaagacaggtggcactcacagagttccca 487
Query: 301 ggtt----tc---------tttcaaacacaaccctgccaagtggttcttagcttgttata 347
|||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 488 ggttcgtttcataagtgactttcaaacacaaccctgccaagtggttcttagcttgctata 547
Query: 348 ctgagaaaaaaagcaaaacaaaacaaaaaccaaaacatattaaatgagcccacttaaata 407
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 548 ctgagaaaaaa-gcaaaacaaaa-----accaaaacatattaaatgagcccacttaaata 601
Query: 408 tcccaacttaaggatgctggccaggaattaaaataaaacccagcctgaagaaatgttatt 467
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 602 tcccaacttaaggatgctggccaggaattaaaataaaacccagcctgaaaaaatgttatt 661
Query: 468 ttatgtttacttaaaatatatacatataagctgggcgtggtggtggacgcctttaatccc 527
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 662 ttatgtttacttaaaatatatacatataagctgggcgtggtggcggacgcctttaatccc 721
Query: 528 agcactcgggaggaagaggcaggtggatttctgagttcgaggccagcctggtctacagag 587
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agcactcgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctacagag 781
Query: 588 tgaattccaggacagccagggctatacagagaaaccctgtctcgg-------aaaaaaaa 640
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 782 tgaattccaggacagccagggctatacagagaaaccctgtctcgggaaaaaaaaaaaaaa 841
Query: 641 tgtatatatatatata 656
| ||||||||||||||
Sbjct: 842 tatatatatatatata 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1052
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1042
Effective search space: 675216
Effective search space used: 675216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
