BAC Information

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BAC

Clone NameMSMg01-308B19
Chromosome6 (Build37)
Map Location 109,359,931 - 109,360,246
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308B19.T7 (MSMg01no308_b19.b1)MSMg01-308B19.TJ (MSMg01no308_b19.g1)
ACCAG432280AG432281
length729786
length of high quality
(start - end)
322 (45 - 366)252 (77 - 328)
definitionCHROMAT_FILE: MSMg01no308_b19.b1 PHD_FILE: MSMg01no308_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:21 2005CHROMAT_FILE: MSMg01no308_b19.g1 PHD_FILE: MSMg01no308_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATTTTGCAAATGAACTTCAGTCTGTCTCAGCCATAAACAGTAAA
CCATTCATTATGTCTGGTATGATTTTTTTTCCACTGGTAAAGGTGACTTT
GTGCTGTTTTCTTATAATATTCTTTCCCAATGGATGAGCTAGCTTCTATA
TGGATGTAGAGGCGTGGATGCTGATAATTCCACTGAGCTAAGAAAAAATT
ATGAGTGCAATTTTAGATATTAATATGTAGAATATTCTGGCAAAAGGAAA
GACTGACTAAACAAGAAAAATAAAGGGTAGACTTTCTGAGCTTCAGACAA
TTAGAGAATCAGTTATTTTTATTACCCCCGACACCACCAATAAAAAGCAT
TGGAATGAGCAAAATAGCTCACCCCCCACGTGCAGCTGCATTGGAGGCTG
CTGGCACAGGGAAACTGAAGGCTAAATAAGTAGAAGCTGGTACCTTGTGT
GGCTGAGAAGCACCATCTCTCCATGTCTTTTGCTTACTCTGGACAAAAAC
TAGAAAGCTGCTAGTTATTTATGAAGTCTTGTCTACTTTGGACTTGTGGT
TACTGATGTCACTGCTAAGTTCCCAGGATTATCATGAGCAATGTCTGTAG
CTTTTTACAAACTAACTGCCTGTGTGGTTGATTGTAGGTAGTGTCAGTTT
CAGGGTGGGTTGTTTCAGGCTGTGGTTTA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATGGCAAGCTAGCCACTAGGC
AAAACAACTATCCTTCAACTTCAGACACAATGATCTCCAAATTGGACAAA
TGGGAAACAGGAAATTCAACTGCTGAGCTTTACAAGGACACAGCAGGCAA
GTCCTTGAATAATCTTTATAAAAATGTCTGTTAGAAGCTGAAGAGCCCAA
GTGAGGATGCCTTAATCAGACTTGGGAAGGAGAAGAAAGCAATAACAGGA
GGGGGAAGGAGGGAGGGACATGGGTGGTAAATGGATGTTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNTNNNT
NNNNNNNNNNNNNNNNNTTTTTGGCCCCCCCCTTTTAAAAAAAAAAAAAC
ATGGCGGGGGGGGGGCGGCCCCTTTCTCGTTCCACTACACGCCCCTACTC
CCCTCCCCCCTCATTCTATCCCATACTACTTTACTCATAATAAGCACTTT
CTCACCCCCTTCCCCCTTTTCCTCTATTTTTTCTTTCCCCTTCTATCTCT
TTCCCCCCCTCTTACCCTTTATATCTCACTTACACCCTCATACCTAAAAC
CCCCCCTACCTATAATACCAAACCTAAAATATTACAACTGCCTACTCGTT
CCCCCACTCTAATCTATACATATAACTACCCTCATCTCTTTTTTTTATTC
CNTCCTCTACTCCCCCCCCCTTCCCTGTATTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_b19.b1 MSMg01no308_b19.b1 CHROMAT_FILE:
MSMg01no308_b19.b1 PHD_FILE: MSMg01no308_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:21 2005
         (322 letters)



>mm_chr6_109359727_109360447
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccattttgcaaatgaacttcagtctgtctcagccataaacagtaaaccattcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccattttgcaaatgaacttcagtctgtctcagccataaacagtaaaccattcat 264

                                                                       
Query: 65  tatgtctggtatgattttttttccactggtaaaggtgactttgtgctgttttcttataat 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtctggtatgattttttt-ccactggtaaaggtgactttgtgctgttttcttataat 323

                                                                       
Query: 125 attctttcccaatggatgagctagcttctatatggatgtagaggcgtggatgctgataat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attctttcccaatggatgagctagcttctatatggatgtagaggcgtggatgctgataat 383

                                                                       
Query: 185 tccactgagctaagaaaaaattatgagtgcaattttagatattaatatgtagaatattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccactgagctaagaaaaaattatgagtgcaattttagatattaatatgtagaatattct 443

                                                                       
Query: 245 ggcaaaaggaaagactgactaaacaagaaaaataaagggtagactttctgagcttcagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcaaaaggaaagactgactaaacaagaaaaataaagggtagactttctgagcttcagac 503

                            
Query: 305 aattagagaatcagtta 321
           |||||||||||||||||
Sbjct: 504 aattagagaatcagtta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)