BAC Information

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BAC

Clone NameMSMg01-308D18
Chromosome6 (Build37)
Map Location 42,612,533 - 42,612,769
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487
Downstream gene3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308D18.T7 (MSMg01no308_d18.b1)MSMg01-308D18.TJ (MSMg01no308_d18.g1)
ACCAG432371AG432372
length748751
length of high quality
(start - end)
239 (128 - 366)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no308_d18.b1 PHD_FILE: MSMg01no308_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:30 2005CHROMAT_FILE: MSMg01no308_d18.g1 PHD_FILE: MSMg01no308_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGACAGTTCCCGCCTGCAATACAGTAATAAACTTTATATGTGAT
CTAGAGTTAATGGAGTTTACAGATCTAGGACCATCCTTGCCTCTCACTAG
ACAGGGAAATGTAAACATCACTACATCTTCAGTAGTCATGTACTCTAAGG
TACTTGTGTCCTAAGATATTAGTAGCTCCACCACAGATGCTCCACACACC
TCTAATACTGGCAGCGAAGAAAATGTACATTCCAGATAATTTCACAAACC
TACAGAAAGAGAATATGGAAGCTTTTCTGAATGTAACTTAGAAGTGACTG
TCTGTCAAAAGAAATTATTTCCAGGTTCATTACTTTTGATGAAGCATATC
AGAAGACAGATTGAAGACCCACCATGAAATAATTTGAATAAAAGTTATCG
CAAATGTACCAAAGTATGAAATATGGAAAAATGAGTCTTCCACAAATATG
CTCAAATTAATAATTTCCCCTTGTTATTAGAAGACAACTTCAATAAATAT
GCTTGAGAGTTAGACTGTGTGGTGCTATAACGGTGCTTTTGCTCTCCTGT
CTCCATCAAGAGGAAGAAGTGACGATATGATACAGTGTGTTAGACATTTA
TTAAGAGGATGTGACTGTTAGATGATGTAAGGAGGGAATCAGAGGCGGCT
GAAAGCGTTACTGCAGTGCAGGAGAAACAAGAAGGCAAGGCTGACCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGCTCAACACCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGTTTATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGTTTTTTATATCCACAACACGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGCCCACAGCAGCCTTATATATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTTAAATACCCAAGATATAAGATACAATTTCCT
AAACACATGACACTCAAGATAAACGAAGACTGAAGTGTGAACACTATGCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_d18.b1 MSMg01no308_d18.b1 CHROMAT_FILE:
MSMg01no308_d18.b1 PHD_FILE: MSMg01no308_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:30 2005
         (239 letters)



>mm_chr6_42612333_42612971
          Length = 639

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaccatccttgcctctcactagacagggaaatgtaaacatcactacatcttcagtagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaccatccttgcctctcactagacagggaaatgtaaacatcactacatcttcagtagtc 378

                                                                       
Query: 61  atgtactctaaggtacttgtgtcctaagatattagtagctccaccacagatgctccacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgtactctaaggtacttgtgtcctaagatattagtagctccaccacagatgctccacac 318

                                                                       
Query: 121 acctctaatactggcagcgaagaaaatgtacattccagataatttcacaaacctacagaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acctgtaatactggcagcgaagaaaatgtacattccagataatttcacaaacctacagaa 258

                                                                    
Query: 181 agagaatatggaagcttttctgaatgtaacttagaagtgactgtctgtcaaaagaaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagaatatggaagcttttctgaatgtaacttagaagtgactgtctgtcaaaagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)