BAC Information

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BAC

Clone NameMSMg01-309E11
Chromosome6 (Build37)
Map Location 66,858,807 - 66,859,267
singlet/doubletsinglet
Overlap gene4930597O21Rik, Gng12
Upstream genePrdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008
Downstream geneLOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309E11.T7 (MSMg01no309_e11.b1)MSMg01-309E11.TJ (MSMg01no309_e11.g1)
ACCAG433115AG433116
length742721
length of high quality
(start - end)
328 (36 - 363)463 (77 - 539)
definitionCHROMAT_FILE: MSMg01no309_e11.b1 PHD_FILE: MSMg01no309_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:49 2005CHROMAT_FILE: MSMg01no309_e11.g1 PHD_FILE: MSMg01no309_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCC
ACCTTCTTGAGTTCTTTATATGTTTTGGATATTAGTCCCCTGTCCAATTT
GGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA
TTTTCCCCCTGTGCTCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTA
TTTTTTTTCCCCGCCCCCGCCTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTCACCTCACCAAAAGGATATAGGAATGGATCAATTCACACTTTTCTGC
ATTGTTATCTACCAGTTGTGCCAGCACCATTTATTGAAAATGCTGTCTTT
CTTCCACTTGATGGCTTTAGCTCTCCTGTTGAAGATCAAGTGATCATATG
TGTGTGTTTTCATTTCTCATTCTTCACTTCTATTATTATGATTTTACCTG
TCTTGTCATTCCCCCTCCCCCGATGAATGTCCCCATCCCTACCATTTTTT
GCTTTTCCACCTTCTCTCACCCTTGCTTTGTCTGTTTACCTCCATCATTT
TTTTTTTTATCTTCTTGTATTTACCCCCCTTATTCTTTCCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAACTGGGCAATATGCGAAT
TCACTGACAGTGAAGCTGCTACACAGATTACTGATTGTATCTTCCCAATA
AGTAATTCTGTACTTATCTTGCTGCCTGCTGGAAGAGTGGGGTGAGGCTG
ACCTGAAAGCAGCAGGCTAGACCAGCTGGGCTTGCCACACAGAGAGCAGC
TATCGAATACTGTTCATGGAGGGTGTGCATACCAAACACTGCTGACTGAA
TCTCACTATTAACTCCTTTTAAATATACAGGTTGCCTTTGGGTAGGTGCA
CTGTCACCTCCACTTTAAGGGTAGTGATTTTAAGTCTTCAGGGCTGGTAA
GAATCATAGCTGGACTGAACCTGGACAGGAAGCTCCTTCCAGACAGGACT
GGGTAATTTTGGTGAGCCCATTGTCATGCAGGAAGTAACCACTCAGAACT
TCATTTCAGAGAAATCACCTGGTGACAGCAGAGTGCAAAAGTCAGGTGCA
GAGAGAGGCTGGCTAGGAAGTGGCCAGGGATAGGGCTGCCTGTGATAGAA
GGAAGTGTCAGGGAGAAAGGAGATCAGATAACTCAGGGGTTCAGAGTCTA
ACAACTTGCAGGAAGGGGGAGGTCCTGAAAAGACCTGATAAGGGCAAAAA
AAAAAAAAAAAAAAACCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_e11.g1 MSMg01no309_e11.g1 CHROMAT_FILE:
MSMg01no309_e11.g1 PHD_FILE: MSMg01no309_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:49 2005
         (463 letters)



>mm_chr6_66858607_66859467
          Length = 861

 Score =  787 bits (407), Expect = 0.0
 Identities = 449/463 (96%), Gaps = 2/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaactgggcaatatgcgaattcactgacagtgaagctgctacacagattactgatt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 661 ctagaaactgggcaatatgcgaattcattgacagtgaagctgctacagagattactgatt 602

                                                                       
Query: 61  gtatcttcccaataagtaattctgtacttatcttgctgcctgctggaagagtggggtgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 601 gtatcttcccaataagtaattctgtacttatcttgctgcctgctggaagagtggggcgag 542

                                                                       
Query: 121 gctgacctgaaagcagcaggctagaccagctgggcttgccacacagagagcagctatcga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 541 gctgacctgaaagcagcaggctagaccagctgggcttgccacacagagagtagctatcga 482

                                                                       
Query: 181 atactgttcatggagggtgtgcataccaaacactgctgactgaatctcactattaactcc 240
           ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 481 atactgttcatagagggtgcgcgtaccaaacactgctgactgaatctcactattaactcc 422

                                                                       
Query: 241 ttttaaatatacaggttgcctttgggtaggtgcactgtcacctccactttaagggtagtg 300
           |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 421 ttttaaatctacaggttgcctttgggtaggtgcactggcacctccactttaggggtagtg 362

                                                                       
Query: 301 attttaagtcttcagggctggtaagaatcatagctggactgaacctggacaggaagctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 attttaagtcttcagggctggtaagaatcatagctggactgaacctggacaggaaactcc 302

                                                                       
Query: 361 ttccagacaggactgggtaattttggtgagcccattgtcatgcaggaagtaaccactcag 420
           |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 301 ttccagacagga-tgg-taattttggggagcccattgtcatgcaggaagtaaccactcag 244

                                                      
Query: 421 aacttcatttcagagaaatcacctggtgacagcagagtgcaaa 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aacttcatttcagagaaatcacctggtgacagcagagtgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space:   385503
Effective search space used:   385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)