BAC Information

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BAC

Clone NameMSMg01-309N13
Chromosome6 (Build37)
Map Location 11,017,583 - 11,017,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309N13.T7 (MSMg01no309_n13.b1)MSMg01-309N13.TJ (MSMg01no309_n13.g1)
ACCAG433518AG433519
length759736
length of high quality
(start - end)
313 (46 - 358)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no309_n13.b1 PHD_FILE: MSMg01no309_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:32 2005CHROMAT_FILE: MSMg01no309_n13.g1 PHD_FILE: MSMg01no309_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTGAGTTCACTTTTACATATTATTGGAATTATAAGATTATGGA
AATATGGAATTGATCTCCTTAATCCTGTGGTTCTGGAAGAAATGAATGAG
CACCAGAGTGAAGTAGGATTGTCTATAAAATACTCTGAAATTGCTATTCT
GACACAGTGTTCTACCTTAATTATTAATGTGAGTATCCCTTTTGTTTGTT
TGTTTTTAGACAAGAACACAGACAGCCTAGCATGGCATAGAGAACACTGT
GTAGTCATGCCTAGTCTATATTTCATGGTCTGTCTTGCTTTCTTTCCTTT
CTTTCCTTTTNATCNATCTTATATCCATATATCTCACTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCCCTAAAATAAAAAAATATTCCGGGCGGGG
TCGGTTTCTTTCCCTCTTTCTCCCTTTCCATTCCTTCTTCATAAGCTCCT
TTCTTTTCTTCTACCCCCCTTATTTTATTTTTTTACTTTCCACATTTTTT
CGTTTTCCCTGCCCCCCCTTTTTCCAAATTTTTTCCCCCCTTTCCCTTCT
CCCATCCCCCCTTTTGCCTTATTAAGTCTTCCTTTCCTCCTTCCCTCTTT
TGTTTATTTTCTTTTCCCTCTACTTTTCTTTTTTTTTTACTTTTTAAGCC
TTTTCATCTTTCACCGCTAGATTTTTCATTTACCTCCTCCCCCTCCTTTA
TTTTCTTTC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGGTG
TGTAATAGTGGGGTGATGGGCACGCAACAAATCAGGAGCTGTCACGCCAT
ATCAGGTGCTGAAACGACACGCTGCGGGTTATAAAAGCAGCGCTCTTTTC
CCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTCATGCTGCGGAA
GATTCTGGTTTGTTGCATCTTTCTTGCCGGTCGAGCAGGACGCAATACAT
GAGAAGACCAATTTCAAGGTTTTTTTTTGTAGAAGAGAGTGAAGATTCCC
AACTTAAATTTTCGTTACATCCNNNNACCAAAACCATAGAAGAAAACTTT
CNTAAGCGTAGGAAAAAGAAGCCAATAAAACATCNNAAACTCGGGGGGTG
GGGCGCCAGCAAGGAAATTCCTCCTGTCACATAATATTCAAAACACCAAA
TGCACAAAACAAAACAAAAAAAAAAGAATATTATAAGCAGTAAGGGGAAA
AGGTCAAGTAATATATAATTCAGACCTATAAAAATTACACCCTACTTCTC
ACCAGAGACTATGAAAGCTAGGAGATCCTGAGCAGATATCCTATAGACCT
TAAAAAGAATACTATTGCCTGCCCAAGGCTACTATAAAACACCCAAACTT
CTCTATTACCATAGAAGGAAAACCCCACATATTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_n13.b1 MSMg01no309_n13.b1 CHROMAT_FILE:
MSMg01no309_n13.b1 PHD_FILE: MSMg01no309_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:32 2005
         (313 letters)



>mm_chr6_11017379_11018092
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattgagttcacttttac-atattattggaattataagattatggaaatatgga 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattccattgagttcacttttacaatattattggaattataagattatggaaatatgga 455

                                                                       
Query: 64  attgatctccttaatcctgtggttctggaagaaatgaatgagcaccagagtgaagtagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attgatctccttaatcctgtggttctggaagaaatgaatgagcaccagagtgaagtagga 395

                                                                       
Query: 124 ttgtctataaaatactctgaaattgctattctgacacagtgttctaccttaattattaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgtctataaaatactctgaaattgctattctgacacagtgttctaccttaattattaat 335

                                                                       
Query: 184 gtgagtatcccttttgtttgtttgtttttagacaagaacacagacagcctagcatggcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtgagtatcccttttgtttgtttgtttttagacaagaacacagacagcctagcatggcat 275

                                                                       
Query: 244 agagaacactgtgtagtcatgcctagtctatatttcatggtctgtcttgctttctttcct 303
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 274 agagaacactgtgtagtcatgcctagtctagagttcatggtctgtcttgctttctttcct 215

                     
Query: 304 ttctttcctt 313
           ||||||||||
Sbjct: 214 ttctttcctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)