BAC Information

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BAC

Clone NameMSMg01-309O03
Chromosome6 (Build37)
Map Location 49,085,215 - 49,085,529
singlet/doubletsinglet
Overlap geneIgf2bp3
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309O03.T7 (MSMg01no309_o03.b1)MSMg01-309O03.TJ (MSMg01no309_o03.g1)
ACCAG433545AG433546
length737740
length of high quality
(start - end)
319 (46 - 364)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no309_o03.b1 PHD_FILE: MSMg01no309_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:35 2005CHROMAT_FILE: MSMg01no309_o03.g1 PHD_FILE: MSMg01no309_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGATCATAAGAGGAGGCCTACATTAAAGAGTCTATCTGTAAGAT
GGTCCTTTCCAAAGAACTTCCTTTTATAGCTCCACTGAATCTAGCAGGTC
AAGGTAAGGACAAGGCACACAGTGAATCAAAGCACACTGCGGCAGCTGTC
AGCATGCAGAGCTTACAAAGGTGGGGTGAACATTTCTAGATCTGAACATG
AGTGGAAATCGTAAATACGAAGCTGTCTCCTCTCTCCTGAGCTGTCTACT
GTTCTGAGACAGAAGCTACTAAGTAGTAATTATAGGTTCATTTTAACAAG
AACTGGGGCTCTGTCTCTTCATACCCCCCCCCTTCCACTGCTCTTAGCTT
CCCAGCCCGCCCCCCAAACCCCAACCAAAAATAATTTTTATGTATCTACA
GAAAATTACTTATTAATTTAATTGCCTGAAGTTGTTCTCTGGCCCCATGA
TACAGCGAACTCTTAAGAGGCACACTACATTTTAAAGGGAATTTCCTACT
TCATCAGGGTTCCTTCCTTCTTAATCACTTTTCAAAGGATACTTCACCTT
TTGTGGTATTAGTTTGAGCATCTGCCTACTGGCTGTCTGTGAATGCGCTT
TCTTCCTCGAGGATAGTCGACCTCTAACTTGCCAATATAATGCCCACCTC
CTTCTTTCCTTATGAACAGGTTCTCACATATTTCATT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTGGA
ACTCAGAAATCCGGCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGTGT
GCGCTACCACACCCAGCTTGTTGTTTTTTGTTTGTTTGTTTGTTTGTTTT
GTCTTGTTTTGTTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGCATA
GCCTTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTAGCCTCGAACTC
AGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGCAC
CACCATGCCCGTCAGGTAATGTCTTAATAGCAGGAAAAGATCCTCAGGAC
TTGCTTTTATGTTATAGACACTTACAACAGGCTTTAGCTGATAAAGAACA
GCAAATAGATCCAGAATAGGTACAAACTCAGGACTTTAGACTTACAGAAC
AAGCTGTTTTTCCCTAGAAGATAGCTATTCTCAGGGACAGTTTAAAATTT
TTAAATGATTTTCAAAAACTGTTAGGTGATATCAATTGGATTCACCCCTA
TTTAAAGCTTAGTACAGGAAAATTGAAACCTTTATTTGATATTTTTAAAG
ATAGTGCTGATCCTATCTCCCACCCCTAGATCTTTAGCCTCAAAAGGATT
GCTGGCCTTACTACAAGTGGAAAGAGCTACTGAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_o03.b1 MSMg01no309_o03.b1 CHROMAT_FILE:
MSMg01no309_o03.b1 PHD_FILE: MSMg01no309_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:35 2005
         (319 letters)



>mm_chr6_49085011_49085729
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagatcataagaggaggcctacattaaagagtctatctgtaagatggtcctttc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagatcataagatgaggcctacattaaagagtctatctgtaagatggtcctttc 264

                                                                       
Query: 65  caaagaacttccttttatagctccactgaatctagcaggtcaaggtaaggacaaggcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaagaacttccttttatagctccactgaatctagcaggtcaaggtaaggacaaggcaca 324

                                                                       
Query: 125 cagtgaatcaaagcacactgcggcagctgtcagcatgcagagcttacaaaggtggggtga 184
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 325 cagtgaatcaaagcacactgcggcagctgtcagcatgcagagtttacaaagggggggtga 384

                                                                       
Query: 185 acatttctagatctgaacatgagtggaaatcgtaaatacgaagctgtctcctctctcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttctagatctgaacatgagtggaaatcgtaaatacgaagctgtctcctctctcctg 444

                                                                       
Query: 245 agctgtctactgttctgagacagaagctactaagtagtaattataggttcattttaacaa 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctgtctactgttctgagagagaagctactaagtagtaattataggttcattttaacaa 504

                          
Query: 305 gaactggggctctgt 319
           |||||||||||||||
Sbjct: 505 gaactggggctctgt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)