BAC Information

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BAC

Clone NameMSMg01-311C13
Chromosome6 (Build37)
Map Location 26,324,903 - 26,325,194
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C13.T7 (MSMg01no311_c13.b1)MSMg01-311C13.TJ (MSMg01no311_c13.g1)
ACCAG433739AG433740
length721722
length of high quality
(start - end)
---292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no311_c13.b1 PHD_FILE: MSMg01no311_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005CHROMAT_FILE: MSMg01no311_c13.g1 PHD_FILE: MSMg01no311_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCAAGAGTATTTGTTTACAT
GTTTATTTTTGTTTAATATACCAATATCTATTTACAGTAAACTAAGTATT
GATAGTATGCATCTTTGGGCTGAATTCTTAAATATTTGTCAAAGAACTAA
AGTCCAGTCACTATGTATATATGGGCTAGCTCAAAGATGATAAAAGTAAC
CCTCCATATAGCAAACACTTAATTTTGCATAGCTAGAATCATTGGTACTT
CATTTACAGCTTAATTTTTTAAGAAAAATTATCCTAATATGTAAATATAG
GATTTTTAAGTAGAGAATGTTTAAAGACAACTTACGTAGGATTTTATACT
TATTAAGCATTAAATATATACCCCCACACTCCCTTAATCACAGCAATAAA
GGGGTAGAGCATAAAGACCGGTTCAGAGCCAGCTTCAGCTACATAGTAAG
TTTAAGAATAGCCTTGCTTACATGAGATTATGTTTCAGAAATAATAATCA
CTAAATAAGTAGCAAAACAGTGACACTTAATTGGGAAACATTTTAATATT
GTGTAAGATTGGACAATATGTAATAAATGTTACACAGATTATAAATAGGA
ATTTTTCTACAATACAGATACTCAAACTTATAAATCTCAATTAATTCTGA
TACAATTCAGAATATTTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c13.g1 MSMg01no311_c13.g1 CHROMAT_FILE:
MSMg01no311_c13.g1 PHD_FILE: MSMg01no311_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:56 2005
         (292 letters)



>mm_chr6_26324703_26325394
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttccaagagtatttgtttacatgtttatttttgtttaatataccaatatctatttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acttccaagagtatttgtttacatgtttatttttgtttaatataccaatatctatttaca 433

                                                                       
Query: 61  gtaaactaagtattgatagtatgcatctttgggctgaattcttaaatatttgtcaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtaaactaagtattgatagtatgcatctttgggctgaattcttaaatatttgtcaaagaa 373

                                                                       
Query: 121 ctaaagtccagtcactatgtatatatgggctagctcaaagatgataaaagtaaccctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctaaagtccagtcactatgtatatatgggctagctcaaagatgataaaagtaaccctcca 313

                                                                       
Query: 181 tatagcaaacacttaattttgcatagctagaatcattggtacttcatttacagcttaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tatagcaaacacttaattttgcatagctagaatcattggtacttcatttacagcttaatt 253

                                                               
Query: 241 ttttaagaaaaattatcctaatatgtaaatataggatttttaagtagagaat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttttaagaaaaattatcctaatatgtaaatataggatttttaagtagagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)