Query= MSMg01no311_h16.b1 MSMg01no311_h16.b1 CHROMAT_FILE:
MSMg01no311_h16.b1 PHD_FILE: MSMg01no311_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:20 2005
(236 letters)
>mm_chr6_56565836_56566473
Length = 638
Score = 379 bits (196), Expect = e-110
Identities = 222/232 (95%), Gaps = 4/232 (1%)
Strand = Plus / Plus
Query: 3 cggaattcaagtcaaggcaaatgtagttgcataattcacactctccaccattgaattgta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcaagtcaaggcaaatgtagttgcataattcacactctccaccattgaattgta 262
Query: 63 caacctgtcaccaaccgaagcatcagaagaagaaaaatcggaaacaggcatgctccatac 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 caacctgtcaccaaccgaagcatcagaagaagaaaaatcggaaacag-catgctccatac 321
Query: 123 aagttcctgcttcttctcagcagccggtagactcgaactgtgatttccggctcagaacac 182
|||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct: 322 aagttcctgcttcttctcagtagccggtacactccaactgtgatttctggctcagaacac 381
Query: 183 agtaagaaagaaaagcccagtgccctgtctggggg---tgcggggggggggg 231
|||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 382 agtaagaaagaaaagcccagtgccctgtgagggggggatgcggggggggggg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 638
Length adjustment: 9
Effective length of query: 227
Effective length of database: 629
Effective search space: 142783
Effective search space used: 142783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no311_h16.g1 MSMg01no311_h16.g1 CHROMAT_FILE:
MSMg01no311_h16.g1 PHD_FILE: MSMg01no311_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:20 2005
(286 letters)
>mm_chr6_56748029_56748714
Length = 686
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%)
Strand = Plus / Minus
Query: 1 ctgatatcctttctctagcctcctgccatctgggattagaggtgtctgtccctttgccta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 ctgatatcctttctctagcctcctgccatctgggattagaggtgtctgtctctttgccta 425
Query: 61 atgctttatatgtggccattcttattttcaagactggacttgttctaacagttgaagtta 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 atgctttatatgtggccattcttattttcaaaactggacttgttctaacagttgaagtta 365
Query: 121 ggaagtaggcaattctgaacgttttttgtttcgttttcgttacatgtatctttaggcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggaagtaggcaattctgaacgttttttgtttcgttttcgttacatgtatctttaggcaaa 305
Query: 181 tctataacatttttgcttgccaacaagtctcgcagaccacaggcacttgctacttcaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctataacatttttgcttgccaacaagtctcgcagaccacaggcacttgctacttcaagg 245
Query: 241 ctttgcttttttatctggggcatggagggtgtctgctgcattgc 284
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 ctttgctttgaaatctggggcatggagggtgtctgctgcattgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
