BAC Information

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BAC

Clone NameMSMg01-312J17
Chromosome6 (Build37)
Map Location 57,551,873 - 57,552,561
singlet/doubletsinglet
Overlap geneHerc5
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
Downstream genePigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J17.T7 (MSMg01no312_j17.b1)MSMg01-312J17.TJ (MSMg01no312_j17.g1)
ACCAG434777AG434778
length728791
length of high quality
(start - end)		687 (42 - 728)---
definitionCHROMAT_FILE: MSMg01no312_j17.b1 PHD_FILE: MSMg01no312_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:43 2005CHROMAT_FILE: MSMg01no312_j17.g1 PHD_FILE: MSMg01no312_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGACCTGAATTCATATCACAAGCAAAGTATTCACATAAAAATCAAGG
CATTGCAATGTGCAGTTGTAATACCAGTGCTAGCAATATGGAAATAAAGG
ATCCCTTGGGCTCCCTGGTCTGTTGGGATCCCCAGGCAAATGAAAAAGAC
CCTGCCTCACAAAACAAGGTGGGTAGCTCCTGAGGTCCAATACCAAAACA
CCAAAATGTTATCCGCTGGTCTCCACAAGCACATGCATACACGCACAGAC
ACAGAAAGAGACACAGACACACACACACAGGTCTTTCTCTTCACAACTAA
GATTAATGTAATTTGAACAATTGATTAATATAGTTCAGACAATTGAGGTT
TCCTAATTTAAGTCATGGCTTTTGAACAACTAAGAAAAATAATAAAATTA
AAAATGAAAATAATTTGGTGGACATTAAAATAATGTAGGTCAGTGGTGGA
GCACTTATCTAGCACTCCTAAGGTATTGCATTTTATTTATTGAAAATAAT
TATAGTTAATAATAATAAATTTTAAAAATTATTTGATGTATCATTTTTTT
CTAGTGCTGAGAATCAACTCTAACACCCAAGCAAACATTCTACCCTTAAT
ACACCACCTGGTCCTACAGATTTCAGTTTTTATACAAGCAAGAATTATAA
AAATACTGTTCCAAGTCTGTATCTTTTG

GCAGCGGGAGGTCTGGCGTGTGTCTGGCCTCCGACACCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAAGTTCTCTAGACAATCCTCTATGCTAA
TGTATGCGTATTTTCCCCCCCCACAGGAACGCTGGGTCAAACTAAAACGT
GCGAATACATAATTGAAATCATATAGTTATCAGTTTTGTGAAACCAATAA
CAAGTATTGTAGGATTTTTCACATCCTATCACAGTATAAGAATACAATGT
CTTAAGATTACTAGTTGTCGTGTGTGATGAAGATTAATAACATCTGCATA
CCATGATCACCATTTTTTTTATACAAATAGGTTCCATGCCCTGGAGAAAA
AAATGTTGGGTGGTTTCCCCCCCCCGCCCCCCAGTTAANATTTGAGAGAG
TAATTAGTTTAATCCCCCCCCCCCCCACCTCATTAAAAAATCTTGGGGGG
TGCCGAGGGGGTTTATCGTGGATTCGTTGTCCGTTACCTGGTTGTTTTAG
GAGTTGTATTTCGGGATTATATAAATAGTGACGTTCGCATACTGTTCGGC
TTCGTTCGTTTCCTTTTCCCATAGAGTGGATATACAATCCAATATTGGGA
ACTTTCGCACCGTTTAACCCTTTTATGTTCATTCCTTTGTTCGTAAGCCT
AATCTTTATACGTTTAACCTCCAAAAAACCGAATACCAATCTATAAACGC
GCATGTGGCGATTACACCTGGATACACAAAAACTATGGGTAACTGAGCAC
GAATAAATTAGACCCCTTTATCCTATAGGGGCCACCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j17.b1 MSMg01no312_j17.b1 CHROMAT_FILE:
MSMg01no312_j17.b1 PHD_FILE: MSMg01no312_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:43 2005
         (687 letters)



>mm_chr6_57551713_57552803
          Length = 1091

 Score = 1270 bits (657), Expect = 0.0
 Identities = 679/689 (98%), Gaps = 6/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgacctgaattcatatcacaagcaaagtattcacataaaaatcaaggcattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattcaatgacctgaattcatatcacaagcaaagtattcacataaaaatcaaggcattg 790

                                                                       
Query: 65  caatgtgcagttgtaataccagtgctagcaatatggaaataaaggatcccttgggctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 caatgtgcagttgtaataccagtgctagcaatatggaaataaaggatcccttgggctccc 730

                                                                       
Query: 125 tggtctgttgggatccccaggcaaatgaaaaagaccctgcctcacaaaacaaggtgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggtctgttgggatccccaggcaaatgaaaaagaccctgcctcacaaaacaaggtgggta 670

                                                                       
Query: 185 gctcctgaggtccaataccaaaacaccaaaatgttatccgctggtctccacaagcacatg 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gctcctcaggtccaataccaaaacaccaaaatgttatccgctggtctccacaagcacatg 610

                                                                       
Query: 245 catacacgcacagacacagaaagagacacagacacacacacacaggt----ctttctctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 609 catacacgcacagacacagaaagagacacagacacacacacacaggtctacctttctctt 550

                                                                       
Query: 301 cacaactaagattaatgtaatttgaacaattgattaatatagttcagacaattgaggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cacaactaagattaatgtaatttgaacaattgattaatatagttcagacaattgaggttt 490

                                                                       
Query: 361 cctaatttaagtcatggcttttgaacaactaagaaaaataataaaattaaaaatgaaaat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cctaatttaagtcatggctttagaacaactaagaaaaataataaaattaaaaatgaaaat 430

                                                                       
Query: 421 aatttggtggacattaaaataatgtaggtcagtggtggagcacttatctagcactcctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatttggtggacattaaaataatgtaggtcagtggtggagcacttatctagcactcctaa 370

                                                                       
Query: 481 ggtattgcattttatttattgaaaataattatagttaataataataaattttaaaaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggtattgcattttatttattgaaaataattatagttaataataataaattttaaaaatta 310

                                                                       
Query: 541 tttgatgtatcatttttttctagtgctgagaatcaactctaacacccaagcaaacattct 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttggtgtatcatttttttctagtgctgagaatcaactctaacacccaagcaaacattct 250

                                                                       
Query: 601 acccttaatacaccacctggtcctacagatttcagtttttatacaagca--agaattata 658
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 249 acccttaatacaccacctggtcctacagatttcagtttttatacaagcatctgaattata 190

                                        
Query: 659 aaaatactgttccaagtctgtatcttttg 687
           |||||||||||||||||||||||||||||
Sbjct: 189 aaaatactgttccaagtctgtatcttttg 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1091
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1081
Effective search space:   731837
Effective search space used:   731837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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