BAC Information

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BAC

Clone NameMSMg01-312P10
Chromosome6 (Build37)
Map Location 45,064,459 - 45,064,706
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P10.T7 (MSMg01no312_p10.b1)MSMg01-312P10.TJ (MSMg01no312_p10.g1)
ACCAG435033AG435034
length744738
length of high quality
(start - end)
312 (39 - 350)251 (68 - 318)
definitionCHROMAT_FILE: MSMg01no312_p10.b1 PHD_FILE: MSMg01no312_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:09 2005CHROMAT_FILE: MSMg01no312_p10.g1 PHD_FILE: MSMg01no312_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
CCCGACCAGAGGCTGGGATCCATTCAGGTCGGGGCCAGCCCCTCTCATCT
TCTGTGTGAAGCAGACCAAAGGAGTCTAGGGCACCAGAGGACTTCCCACA
CAACAGGACCCCTAGCAAACCCAGGACCTCCTGATCACCTGAGAGCACGT
GGGCAATAGAAGCAACAGAGCTTCTTGGTCAGGGTCCCATCTGGCCTTCA
TCCTCAGTCAGGAGGCAGAGCTGAAACCCAGACCCCTGGGCACATACCTT
GCCAGAGGAGAATTGGCTTACAGGGAGAGTTCTGACCTCAGAACTCAGGA
TATGTTTTAATTCTNAGGCTGTTGCCCACCTACCCTGAAAGACAAGAGCT
TGCCTGTCCCCCCCGCAAAAGCACCAAGAAAATCGGGGGGGAGGTGGACT
CCTACGAGTGCTGACAGAGGCTACAAAAATCACAGGAGGATCAAGCTCCA
AACAGAGACAGCTTGAATATTACCACCAGAGATTTCCAGATGGTGAATAG
TACACGTATCATGATTTTCTACCATATACCCACAATTTTGGTCATCATCT
TATCCCACCATTCTGACACCTATGAGTCCTTGTATGTCCATCTCTCCCCT
TTTTTTTGATGTCTATTTAACACCATTTCTCCCGATGTTCCGCCACTATT
TTTCGAAGCGGTTTCATCCATTTATTTCGAGTTTTACCGCGCCG
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGAATTTAACATTTCTAAAACAAATTATAGA
TATAGAAGATTTAAACCTGTTTACTCACAAGATTACACACTTGAGATCCA
TAGAAATACATTTTGGATGTTGTTTTGATGAGTGAAAGTAATTCTGAAAT
TATTGGTCAAATGCTATCAAGTTATCTTTTACTATTGTAGAGTAATACGT
AATGAGCAAGTTGCAAATCAAAATATACTTCACTTTGGAGAGATATTTTT
TATACCTAACCTATCTAAACATACAGCGGCTTTGATATAATTACAGATTT
AATTTANTTTTATTTCCTGNACAGNCCCCGATCTTGCCTAAGTCTCTGTT
CATAATAGACCCCCCCACAAATCCATTAAATATCTCGGGGGGGGGGTTCA
TATTTTAAATGATTGATAGTAGAGGAAAATCAACATAATAACTAACATTT
TACAGATAACATATTAAATAAAACATAAAATGTACAAGGCAAGGAATACC
ATTCTATCAACTACATTAAATTCAATGAAAAGGATCTATTTTAAAGAAAC
TTCAGTCTTAAGTTTTATATTGCATTTCCTTTGCCTTCAAAATATTGAGT
TTCATTATTAGATACAGTACTTATAACCCCCAGTCATTTTGCAATCACAA
TACCTTTCCTACTCGATTTCAAATACCACATATCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p10.g1 MSMg01no312_p10.g1 CHROMAT_FILE:
MSMg01no312_p10.g1 PHD_FILE: MSMg01no312_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:10 2005
         (251 letters)



>mm_chr6_45064259_45064909
          Length = 651

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaatttaacatttctaaaacaaattatagatatagaagatttaaacctgtttactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 448 caggaatttaacatttctaaaacaaattatagatatagaagatttaaaagtgtttactca 389

                                                                       
Query: 61  caagattacacacttgagatccatagaaatacattttggatgttgttttgatgagtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caagattacacacttgagatccatagaaatacattttggatgttgttttgatgagtgaaa 329

                                                                       
Query: 121 gtaattctgaaattattggtcaaatgctatcaagttatcttttactattgtagagtaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtaattctgaaattattggtcaaatgctatcaagttatcttttactattgtagagtaata 269

                                                                       
Query: 181 cgtaatgagcaagttgcaaatcaaaatatacttcactttggagagatattttttatacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cgtaatgagcaagttgcaaatcaaaatatacttcactttggagagatattttttatacct 209

                   
Query: 241 aacctatc 248
           ||||||||
Sbjct: 208 aacctatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)