BAC Information

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BAC

Clone NameMSMg01-312P17
Chromosome6 (Build37)
Map Location 131,610,955 - 131,611,502
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107
Downstream geneTas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P17.T7 (MSMg01no312_p17.b1)MSMg01-312P17.TJ (MSMg01no312_p17.g1)
ACCAG435046AG435047
length726727
length of high quality
(start - end)		650 (42 - 691)658 (70 - 727)
definitionCHROMAT_FILE: MSMg01no312_p17.b1 PHD_FILE: MSMg01no312_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:11 2005CHROMAT_FILE: MSMg01no312_p17.g1 PHD_FILE: MSMg01no312_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAAAATGTCTTTAATTTCTTTCTTTATTTCTCCCCTGACCATGTTATCA
TTGAGTAGATAGTTGTTCACGCTTCCATGTATATGTGGGATTTCTGTTGT
TTTTGTTGCTATTGAAGACTAGCATTATTCCTTGGTGGTCCAATAGAATA
AATAGGATTACTTCAATGATATTGTATCTGTCGATGTTTCAGTTGATTTT
TGAGAAGGTTCCATGAGGTGCTGATAAGAAGGCATATTCTTTTGTTTTAG
GGTGAAATGTTCTGAAAATATCTGTTAAATCCATTTGGTTCATAACTTCT
TTTAGTTTCACTTGTCTCTGTTTAATTTCTGTTTCCATGATTTGTCCATT
GGTGAGAGTGGGGCGCCGAAATCTCCTACTATTATTGTGTGAGGTTCAAT
GTGTGTTTGAGTTTTAGTACCATTTCTTTTACAAGGTGGGTGCCCTTGCT
TTTGGGGCAAAGATATTCAGAATTGAGAGTTCATCCTGGTGAATTTTTCT
TTTGATACGTGTGTAGTGATTTTCCCCATTTTTTTTGTAACATTTGATTG
AAAGATTATTTTGTTGGATATATTAGGATAGCTACTCCAGCTTGTCTCTT
TGCACCATTTCCTTGAAAAAAATTGCCCACCCTTTTACTTTGAGGTAATG
TGCGTCTTTGACTCTGATGTATGTTC

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAAGATTAAGACAAGGAGATCTCTGAGTT
CAAGGTCATCTGGGATTAAAGGTGTGGCAGCACACGCCTTTAATCTGGGC
TACACCTTCTGCTGGAGACCATATAAGGATATTGGAAGAAGGGAGCTGCT
CTCTCCTTCACCTGCTTGCTGTGCAGGACTGAGCAACTGCTAGATCCTTG
AACTCGATTCACAGCTGCTACCGACCATTGTTGGGAATTGGACTGCAGAC
TGTAAGTCATCAATAAATTCCTTTACTATATACAGACTACCCATAACTTC
TGTGATTCTAGAGAACCCTGACTAATATATTGGTAAAGTGAAATTTATAT
AAAACAGATAAATCATAGTAATGATATAGCTTTTGCGTAACCTTGCAAGA
CACAGCATTTTTCCGAGTTTTCCTTAGAAACAACATCCAGTATATCTGTT
TAGTGTTGTTGAATATGCTTTTTAAGTTAAATTGGATAATTTCTGTCAAA
TTATATCTCAAGAATATTTACCATTAGATTTTCTTTGAAGTGTTATTGAT
TCAGTTCTTATCTAGAGAGAGGGGTTTGTGGCCTACATTCATTTGAAGTT
TTCATACTATATAAAAGAGGGGTCCATGTGGTTATCTAATTCTTGCAGCA
ATGATTTAAAAAAAGTGTTTTGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p17.g1 MSMg01no312_p17.g1 CHROMAT_FILE:
MSMg01no312_p17.g1 PHD_FILE: MSMg01no312_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:11 2005
         (658 letters)



>mm_chr6_131610445_131611502
          Length = 1058

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%)
 Strand = Plus / Minus

                                                                        
Query: 111  tattggaagaagggagctgctctctccttcacctgcttgctgtgcaggactgagcaactg 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tattggaagaagggagctgctctctccttcacctgcttgctgtgcaggactgagcaactg 999

                                                                        
Query: 171  ctagatccttgaactcgattcacagctgctaccgaccattgttgggaattggactgcaga 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  ctagatccttgaactcgattcacagctgctaccgaccattgttgggaattggactgcaga 939

                                                                        
Query: 231  ctgtaagtcatcaataaattcctttactatatacagactacccataacttctgtgattct 290
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 938  ctgtaagtcatcaataaattcctttactatatacagactacccataacttctgtgactct 879

                                                                        
Query: 291  agagaaccctgactaatatattggtaaagtgaaatttatataaaacagataaatcatagt 350
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 878  agagaaccctgactaatatattggcaaagtgaaatttatataaaacagataaatcatagt 819

                                                                        
Query: 351  aatgatatagcttttgcgtaaccttgcaagacacagcatttttccgagttttccttagaa 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 818  aatgatatagcttttgcgtaaccttgcaagacacagcatttttccgagttttcctgagaa 759

                                                                        
Query: 411  acaacatccagtatatctgtttagtgttgttgaatatgctttttaagttaaattggataa 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  acaacatccagtatatctgtttagtgttgttgaatatgctttttaagttaaattggataa 699

                                                                        
Query: 471  tttctgtcaaattatatctcaagaatatttaccattagattttctttgaagtgttattga 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  tttctgtcaaattatatctcaagaatatttaccattagattttctttgaagtgttattga 639

                                                                        
Query: 531  ttcagttcttatctagagagaggggtttgtggcctacattcatttgaagttttcatacta 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  ttcagttcttatctagagagaggggtttgtggcctacattcatttgaagttttcatacta 579

                                                                        
Query: 591  tataaaagaggggtccatgtggttatctaattcttgcagcaatgatttaaaaaaagtgtt 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  tataaaagaggggtccatgtggttatctaattcttgcagcaatgatttaaaaaaagtgtt 519

                    
Query: 651  ttgtaccc 658
            ||||||||
Sbjct: 518  ttgtaccc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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