BAC Information

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BAC

Clone NameMSMg01-313A02
Chromosome6 (Build37)
Map Location 47,946,053 - 47,946,674
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Downstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A02.T7 (MSMg01no313_a02.b1)MSMg01-313A02.TJ (MSMg01no313_a02.g1)
ACCAG435063AG435064
length1,2241,232
length of high quality
(start - end)
689 (91 - 779)347 (503 - 849)
definitionCHROMAT_FILE: MSMg01no313_a02.b1 PHD_FILE: MSMg01no313_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:12 2005CHROMAT_FILE: MSMg01no313_a02.g1 PHD_FILE: MSMg01no313_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGGCTTGNNNNNNAAACAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCTCCTCCACTTCCACCACTGAGGATCAAACCCAGGGC
CTTGTACATGCTAGGCTAATTTCTCAGCTCCAGGCTGCATTTTAGGAAGG
TTTTTTACAGTACGATCACAGATTTTGGTTCTAGTGTTAGATTCAATCAC
TCTCAGCTGTAAGTTAGGGGCGGCCATTATATATCATGATGTGAAGACTA
AGGGAGGCGATCCAATGAGGTGAGTGCATCGCAGTTCTTAAGCCCTCACA
GAAGCTGTGCGTGGAACAACGGAGAGCACCTGGGTATGAGGGAGAACCTG
GGTGTAAGGGACAGCAGAGGAGCCGGGAGATCAGGACCTCTGACCTGTTT
TACCCCTAAGGCAAGAGGGGGAGGAAAAGGTTACAGAATAGAATCAGAAG
TGTTAGTACTCCACATTCCATACTCCCTGACAGTACTCGGGATTGAACCC
AGGAGCCCAAAAATGCTAAAGACATGCTCAGTGGTTAAGAGCACTTGCTG
TTTCTTGCAGAGTACTCAGGTTTGAAATAGAAATTTCTGGTTTCTTTGGG
GACTCAGTTATGTCATACGATGTTTTGTGAAAGTGAGAGGATGTTTTGAT
AAAGCAGATTCGTGAGAGGACATGTGATGTTTAGAAAGACTATAAATATA
ACCTCATGGGAAGAGGCTCTGCCATTGGTTCGCTTTGCTCTGCCTTGCTA
GTCTTCACTGATGGCACTCTTGTATTGGTTCACCTTGTCGTGACTTCGCG
GAGAGTAACTCACCAAAGAACTTGTGATATCCGGCCAGTTTGGCAGAGCC
TCTCAGTTTCTTCTGGATCAAATTGAACTGCTGATGATAGTTTGTCAATG
CTGTTTGCTGAATGTACTGGAATGCCGCTGCTGAATCAAGTTGGCTGTTG
GTTCAAGGACGGCACTGCTGACAATAAGCATGGAATCCTCCCCAAGAATT
ATTCTTAAACTGGCCCTCCCCCTGTTTCCTATTAACTCTTCCGTTGGGCA
ACAAACTAAAAACTCATCCTTACGCTTCTTGACTAATGTTGGTGAACTAT
CTTACTCTCTTCCTCCGTGGCCCTTGTACCTTAACTCTTGGCTACTAACC
TTACACTTTCATTTTTCTTTCATTAACTTACATTCAATATCCCTCCCCTT
TCCCCACTTCAACTTCTCTCTCTC
NNGGCGATGAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTCTCTCTGATGTCAAGTAGTAAGTTG
ACTATTAGTCATACTTCTGAGAAACTGAAGTATAAATCCCCAAACGGGAA
TAAAACCTTCAGGCTAGACTGAGATTACTTTTAAATTGTTACCATTAAAA
GTGGCCTTAATAGTACAAGGATGAAGTAATGAGTTTGAGAAGCAGCGAGG
TATAATTTCCCCCAGATTTCTCTTTAATCCACTCCTCAAGTAGAAAATGA
GTCTTATTCTGGCAACATGGGCAGGCATCAAAGTATTAGTTAAAGAAAAA
GAATATACTTACAGGGACAATTAGATTATGTTGCAACTCTCTCCTGCCCC
AACCCCAAGACAGTCACTATCTTTAGCTTTGGCTGGCCTGGAACTCACAT
TCTTTTTTACCCCGCCCTCAAAGTCATAGAGATTCATTCAAAAAAAGGGG
CCTTCTGGGTGCTGGGCTTAAAGGCACTTGGGAGGCAGAAGCTGGTGGTT
TTCTGAGTCCAAGGCCAGCCTGGTCTACTGAGTGAGTTCCAGGACAACCA
GGGCTACACAGAGAAACTCTGTCTCAAACAAAACAAAACAAAAAAACAAA
AACAAAAACAAAAATAAACTTGCCAGTTTAAGCAACCATTCTCCTCTGTG
GGACATTTTGGCTGTTTTAACTTTCTAGCTGGCACAAAAGCCAATACAAA
CAACCACTGGAGGTCTCTGAGTAAGCATATGCTTTCACTTTTCTGAGGTG
TCAACCCCGGACTACAATTATATGTTGTAACATGAGGATATATGTAAGTC
TCTCTTTAAAAGATATACTCATTTTTATTTTAATGGGCCTGGTTTTCCTG
CCTATATGTCTGTATTCCTGTGTATGAAGTGGCCCTGGAGGCCAGAAAAG
GATGTCAGGTCCTCTGGAACTGAAGCTACCGAAGGTTGTTGCTATCTTGA
AGGGGTGGGAAATAAAACCCAAGTCCCCTGCCAAAACAAAAAAGTGGTGG
TAACCCCCGAAGCCCCCTCTCCAGCCCCCTTTGGTTGGTTTCCAAAATAT
TTTTTAATTTAGTCGGGGGGAGGTTTTTTAAAAATTTCTCTGCCCCCTGT
GATATCCGCCAAGGTGGAGACCCACAAAAAAAATCCCCTCTTAAATACCC
TACCCTCAAGCGCCCGGGAGCAGATCACTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a02.b1 MSMg01no313_a02.b1 CHROMAT_FILE:
MSMg01no313_a02.b1 PHD_FILE: MSMg01no313_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:12 2005
         (689 letters)



>mm_chr6_47946053_47947141
          Length = 1089

 Score = 1145 bits (592), Expect = 0.0
 Identities = 616/624 (98%), Gaps = 2/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacccagggccttgtacatgctaggctaatttctcagctccaggctgcattttaggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 aacccagggccttgtacatgctaggctaatttctcagctccaggctgtattttaggaagg 563

                                                                       
Query: 61  ttttttacagtacgatcacagattttggttctagtgttagattcaatcactctcagctgt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttttacagtatgatcacagattttggttctagtgttagattcaatcactctcagctgt 503

                                                                       
Query: 121 aagttaggggcggccattatatatcatgatgtgaagactaagggaggcgatccaatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagttaggggcggccattatatatcatgatgtgaagactaagggaggcgatccaatgagg 443

                                                                       
Query: 181 tgagtgcatcgcagttcttaagccctcacagaagctgtgcgtggaacaacggagagcacc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgagtgcatcgcagtccttaagccctcacagaagctgtgcgtggaacaacggagagcacc 383

                                                                       
Query: 241 tgggtatgagggagaacctgggtgtaagggacagcagaggagccgggagatcaggacctc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 tgggtatgagggagaacctgggtgtaagggacagcagaggagcccggagatcaggacctc 323

                                                                       
Query: 301 tgacctgttttacccctaaggcaagagggggaggaaaaggttacagaatagaatcagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgacctgttttacccctaaggcaagagggggaggaaaaggttacagaatagaatcagaag 263

                                                                       
Query: 361 tgttagtactccacattccatactccctgacagtactcgggattgaacccaggagcccaa 420
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 tgttagtagtccacattccatactccctgacagtactcgggattgaacccaggagctcaa 203

                                                                       
Query: 421 aaatgctaaagacatgctcagtggttaagagcacttgctgtttcttgcagagtactcagg 480
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 aa-tgctaaagacatgctcagtggttaagagcacttgctgtt-cttgcagagtactcagg 145

                                                                       
Query: 481 tttgaaatagaaatttctggtttctttggggactcagttatgtcatacgatgttttgtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tttgaaatagaaatttctggtttctttggggactcagttatgtcatacgatgttttgtga 85

                                                                       
Query: 541 aagtgagaggatgttttgataaagcagattcgtgagaggacatgtgatgtttagaaagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  aagtgagaggatgttttgataaagcagattcgtgagaggacatgtgatgtttagaaagac 25

                                   
Query: 601 tataaatataacctcatgggaaga 624
           ||||||||||||||||||||||||
Sbjct: 24  tataaatataacctcatgggaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)