BAC Information

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BAC

Clone NameMSMg01-313A20
Chromosome6 (Build37)
Map Location 63,042,932 - 63,043,344
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501
Downstream geneLOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A20.T7 (MSMg01no313_a20.b1)MSMg01-313A20.TJ (MSMg01no313_a20.g1)
ACCAG435095AG435096
length1,2211,245
length of high quality
(start - end)
754 (122 - 875)413 (470 - 882)
definitionCHROMAT_FILE: MSMg01no313_a20.b1 PHD_FILE: MSMg01no313_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:19 2005CHROMAT_FILE: MSMg01no313_a20.g1 PHD_FILE: MSMg01no313_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGTTTTNNNNNNNATCATGTGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTCCAAACTGTATCACCTTTTTTTCATTTGAATATTTGTTTT
GTGGGTGTTTAGTCTCTTGAGTTCTTTACCCACTTTGGATGTTAGCCTTC
TGTCAAATAGGGAGTTGATGAAGATCTTTTCCCATTCTATAGGCTGCATT
TTTCCTTTTGTTACTGTCCTTTGCTTTACAGAAGCTTTTCAGTTTCATGA
CGTCCCATTAATTAATTTTTAATCTTCATGCCTGCAATATTGATACTATT
TTACAGGAAGTTGTCTCCTGTGACAATGCATTCAAGGCTATTCCCACTTT
CTCTTCTATCAAGTTAGTGTATCATATTTTTTGTTGACATCTTTGATATA
CCTGGACTTGAATTTTGTGCAGATGATAGATGAGTATTTATTTGTGTTTT
ACATGCATACGTCCAGTTAGAACAGTACCATTTGATGAAAATGCTTTTTT
CCCCCATTTTATAATTTTGACTTCTTTGGCAAAAATTAAGTGTCCATAAG
TGTGTGGATTTATTTCTGGGTCTTCAGTTCTGTTCTATTGACCAACCTGT
CTGTTTATAATGCCAATATCATATGGTTTTTATTACTATTTTCAGTAGGA
ACACTTGAAACCAGGAATGGTAACATCTCTAGAAATTCAGTTATTGTACA
GGATTATTTTAGCTATGCTGGATTTTTCATTTTTCCATATACATAGCTGA
ACACAGTCCTTTCAAAGTCTGAAATGAATTGTTTGAATTTTGGTGGNAAT
TACATTGATTCTATAGATTGCTTTTTGATAAGATGACCATTATTACTATG
CTAATCCTACTGATTCGTGAACATGGNAGATTTTTGGATGTTCTGATATC
TGCTTTATTTTTCTCTTCAAAGACTAAAGTTCTTGTCCTAAGGNTCTTTT
ACTTGCTTGGTTAAAGTACCCCCGAAATTTCTTATTTTTTAGGAAATTGT
GAAAGGGTGTTCCCCTGACTCTTTTCCACCCATTTTTATTTCGTTTAAAA
AAATATTTTAGTCTTATTTCTGGGTCATCATAATTCTTCAACATCGGATG
GACTTATCTACTTACTCCTTCTTATAAAATCAACTGCGGGCTTCTTCCTC
CTGCTCATCCTTTATGAAATACTATTTTATCTCATTTCTTTGTCTTCCCT
CCATATTATTATTTTCTTTTT
NNNAAATTGAGGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGGATGGAAATAGATACTAGATTTTAAA
TATGGGATATTGTTGTTACGTAACCCCTTCTGGAAGTAATATACGAATGG
ATAAGGTCATGGTAGTAGTTTTTGACAGCTAACTTCTCACATATAGTAGT
AAAAAACTGCTGATCATATTTTAATTGTTTAACTATGTACATGCACACAG
GTTTTACGGTCACCTAGAACAGCTTGAAAAGAGAGATCATTGATTTCCTC
CAAGGAAATATACAGAGAAGATATTTCTTTTGAAACTTGTATTATTTTGT
ACTGTATTTTGACATAACTGCCCCAACAACTTTGAACTAGAAGTTGTATT
TTTAGGATTTCAAGACTAACTTTAGTCTCATATTTTGATGCATTACATAT
TTTTTTTTTCCCCCCCCCGAAGTAGAAAACATTTTTGAAAAAAAAAGGAT
TAATGAAATACACACAATTGATACATAAGTTATTTATATCCACAAATTGA
TTATGATACATTAAAAATGCTATGGTTTTTGTGCATTTGGGAATATTTTA
AACTAAATATGCTAGTGAGTAATACAGGAAAAAATCTGAATCCATATTAC
ATATTTTTGTACTTCTGTTTTCTGGGTTTTGCAGGTAAATCTTCCCTATG
AAAACCTCAATATACATGTGGTCTTTAAAACTACACTGTATGCTAAATTA
TAATGTAATAATTTGTGAAAGTTGAATATGAAAAATGTGTGGTATAGTAT
GGAAGCACATGGATAATCAAGAGTTTATATATAGGTTGCCAGCAAAAGAG
TGATAATCCTCGTCTGAACATTTACAAATGAGAATCAATTGACCTGTGTC
TGAGGGAAGTGGAGTTTTGTTGGAAAGAGTACAAAGATTGCCATCACAGG
AAAGTAGAGTCTTTAAGAGGCCTTTGTGACTCCTTCAAAAAAGCTGCCCC
AGGGCATGTGGAATGCTAACTAAGTTGAAATTTAAGGGGAACAAACACCA
GTGTCCTCTAAAGTTTAACTAATTTGCCCAAAAATTTTTTAACAATGGCA
TTGTGGCCTCTAAAAAAGTGTGTTTTATCCCCGGCCACCTCTGTGAGAAG
AAATTTTCCCACCGGTTGTTTGGGGGAACCGGTAAAATTAAAAGTATAAA
ACAAGTTTGTGAGTCCCAACAAAGGCGCCGTCGTAAAGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a20.g1 MSMg01no313_a20.g1 CHROMAT_FILE:
MSMg01no313_a20.g1 PHD_FILE: MSMg01no313_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:19 2005
         (413 letters)



>mm_chr6_63042732_63043544
          Length = 813

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtagaaaacatttttgaaaaaaaaaggattaatgaaatacacacaattgatacataag 60
           |||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||
Sbjct: 613 aagtagaaaacatttttgtaataaaaactattaatgaaatacacacaattgatacataag 554

                                                                       
Query: 61  ttatttatatccacaaattgattatgatacattaaaaatgctatggtttttgtgcatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttatttatatccacaaattgattatgatacattaaaaatgctatggtttttgtgcatttg 494

                                                                       
Query: 121 ggaatattttaaactaaatatgctagtgagtaatacaggaaaaaatctgaatccatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggaatattttaaactaaatatgctagtgagtaatacaggaaaaaatctgaatccatatta 434

                                                                       
Query: 181 catatttttgtacttctgttttctgggttttgcaggtaaatcttccctatgaaaacctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catatttttgtacttctgttttctgggttttgcaggtaaatcttccctatgaaaacctca 374

                                                                       
Query: 241 atatacatgtggtctttaaaactacactgtatgctaaattataatgtaataatttgtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atatacatgtggtctttaaaactacactgtatgctaaattataatgtaataatttgtgaa 314

                                                                       
Query: 301 agttgaatatgaaaaatgtgtggtatagtatggaagcacatggataatcaagagtttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agttgaatatgaaaaatgtgtggtatagtatggaagcacatggataatcaagagtttata 254

                                                                
Query: 361 tataggttgccagcaaaagagtgataatcctcgtctgaacatttacaaatgag 413
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 253 tataggttgccagcaaaagagtgatgatcctcgtctgaacatttacaaatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)