BAC Information

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BAC

Clone NameMSMg01-313C24
Chromosome6 (Build37)
Map Location 121,246,964 - 121,247,576
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18
Downstream geneSlc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313C24.T7 (MSMg01no313_c24.b1)MSMg01-313C24.TJ (MSMg01no313_c24.g1)
ACCAG435189AG435190
length1,2371,203
length of high quality
(start - end)
723 (140 - 862)322 (499 - 820)
definitionCHROMAT_FILE: MSMg01no313_c24.b1 PHD_FILE: MSMg01no313_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:36 2005CHROMAT_FILE: MSMg01no313_c24.g1 PHD_FILE: MSMg01no313_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTCTNNNNNNNNCCCACTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCCAGTTAGCAAATGTAGCATTAAAGACCCAAATAGGAA
CCCACCATTGGACAGACAACCTTAAAAACCTCCACCCCAGTTAGATCTGT
GAATACAAGTTGGAGGAAGACCAGAATTTTCATAGTTTCTAACTGTCTTC
CCCACAGATATTTATACACTACAAAGGGAAAGATGTTAACTTCATGGTAG
AAAGGCCAGGAAGCACGCAGCCATAGAACACACGGGTACCATTCACTTCC
TGAAGTGTGTATGAAGAGTCAGTCATGCAGGCACAATACACTGCTCCTCT
TGCCAATCATCCTATTTGATCCTGAGAGAACAGAACACAGCCCCAAGCAA
AGGACGTACAATTAACAACTGTTCTTTATGGACATCCCTGTGAGAAACTG
CTTAGATCACTGGATCACTGGGGTGGGAGGACCAACCCTACCTGTAAGCT
CGAGTCCTGGGCGGAGGGAAAGGAGAACACAGACCAAGCGCTTCCACGCA
CCTGCCTCTGCTTCTGAGGCGCAGATACAATGCGGTCAGCTGCCTCAAGC
TCCCACCGCCTTGACCTTCCCACAGGACAGGCTGTCTCCTCAAACTGGGT
CAAAAATAAACCTTTCCTCAGGTCGCTTTTGTATTTTGCTGCAGCGCCTA
GATGAGTAATTAATATAGTGTTCAGATCACAGAGGATAAGAAAAGATACA
TAGGCAAGTTTAGGATACAGGAGACTAGAGAAACGCTAAGTGCATCCTGG
GATCTTGAATTGGAGTGTAGGTAGAATCTGGACTAGAAAGGCTCATCAAC
ATAAAAATCAGTGTAATTTAAATGAGATCATTTACTTAATAACACTTTAC
CAATATTGATCTTCCATTTTTGACAATTGTATAATGCTTATATCAGCAGA
AACTGACCCCAGATTGTATGAAGATTATTTTTTTTTACAACTTTTTAAAT
CTTAGGCTAGTTTAAAATTTTTAGGGATGTGAGCTAAGAATGGTTTCCCT
CCCTTTGGTATAGCAGTCCCCGGTGTTTGGATGGGAAAAAACAATTTTTG
GGAAATTTAAAACCCGGACCCCCAGGGACCCCCCAAAAATTTTTCGGGTT
TTTTTCAACGGTGGGGGTTGGTTTCCCAAAGGAGTATTCTTTATTTTTTC
TCTCACAAGGGGTTTCTAAGAACCCACTCTTTTGTAA
NNNCCCCTCAGGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCAGCTGGATGGAATGCCAATGTAGA
TAAATGATCTTTATTTTGTTCTGCCACTCTCTCCACACAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAATTCGCAGATATCTC
CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTACCACCACCTTC
TGGCTTTTTCCTTCTTTTAAAGTCAGAGTATGGGTAGCCCAGGCTGGTCT
CAAACTTAAGTTTTCTTGCCTCTGTCACAAGAGTGCTGAGCAAAATGAAG
CCTGTTTACATGACGTTTTCATCTCTCTTCCCTCAGTCATCTGACCTTTC
CACCAAACGCAATTATTGGACTGGATGGGACAAAAATAAACTTTATTGTT
TTTTTTTTGCCCCCCATTTACCAAATGCTTGCTCATAAAAAAAAAAAATC
TATCATGGTTTCGAGATACATATGGAATGTTCCCTCCTTTTTCTTTTTTT
TTTCTACAAAATTAAGCAAACACACACACGTATTAAATGATTTGCTATAT
AGTCATTAATGCGTGATTAGGGAAATAAGTTTCAGAATTTTCAGATCTGT
GGGACATGAATTGTTTATATCTGATTAAAAAAAAAACAGTGGGGACACAT
GTTGGCCAAGTGTGAAGCAGGGGCTAGTTCTTCTATGCAAATTTGTTAAG
AAATGTAAGAGGGCTCTCTGCTTTGACAGTCAAATCCCTGACTGAGACTA
GTTTACCCTTTACCTTGCTTCACAGGGAGGGAGGGAGCCCTGTGTCACCT
GGAATCTTTGCTTCAGAATGCCAATGGGCTTGCTGAGTTCTTTTTATTCA
CTTATAAGGCGTGAAAAGACCTTTTCTTTTTCTTGAGGCAGGGCTCTTGA
GATTGACCCCCAAACCCATCCTCCTGCCTCGGTCTCCCGAATGCAAAGAT
TGTGTATCGCCTTTAACCACCTAAGGGGCAATCTTTTTAAAGCAACATGG
GGTTTGTGGGAAAGATATATAAAGTTTTTAAAAAAAAATTCCAAAATTGT
TTTGGTGGCATCCCAAAAAGGGGGGGATTTTGCCCCCAAAACTAATTTTT
CTCCCCCCCAAAAAACTCCTTTTATATCCGGGTAACGTTTTTTCTTCTTT
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_c24.b1 MSMg01no313_c24.b1 CHROMAT_FILE:
MSMg01no313_c24.b1 PHD_FILE: MSMg01no313_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:36 2005
         (723 letters)



>mm_chr6_121246964_121248086
          Length = 1123

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttagatctgtgaatacaagttggaggaagaccagaattttcatagtttctaactgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 613 gttagatctgtgaatacaagttggaggaagaccagaattttcatagtttctaagtgtctt 554

                                                                       
Query: 61  ccccacagatatttatacactacaaagggaaagatgttaacttcatggtagaaaggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccccacagatatttatacactacaaagggaaagatgttaacttcatggtagaaaggccag 494

                                                                       
Query: 121 gaagcacgcagccatagaacacacgggtaccattcacttcctgaagtgtgtatgaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaagcacgcagccatagaacacacgggtaccattcacttcctgaagtgtgtatgaagagt 434

                                                                       
Query: 181 cagtcatgcaggcacaatacactgctcctcttgccaatcatcctatttgatcctgagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagtcatgcaggcacaatacactgctcctcttgccaatcatcctatttgatcctgagaga 374

                                                                       
Query: 241 acagaacacagccccaagcaaaggacgtacaattaacaactgttctttatggacatccct 300
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 373 acagaacacagccccaagcaaaggacgtacaacaaacaactgttctttatggacatccct 314

                                                                       
Query: 301 gtgagaaactgcttagatcactggatcactggggtgggaggaccaaccctacctgtaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtgagaaactgcttagatcactggatcactggggtgggaggaccaaccctacctgtaagc 254

                                                                       
Query: 361 tcgagtcctgggcggagggaaaggagaacacagaccaagcgcttccacgcacctgcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcgagtcctgggcggagggaaaggagaacacagaccaagcgcttccacgcacctgcctct 194

                                                                       
Query: 421 gcttctgaggcgcagatacaatgcggtcagctgcctcaagctcccaccgccttgaccttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gcttctgaggcgcagatacaatgcggtcagctgcctcaagctcccaccgccttgaccttc 134

                                                                       
Query: 481 ccacaggacaggctgtctcctcaaactgggtcaaaaataaacctttcctcaggtcgcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ccacaggacaggctgtctcctcaaactgggtcaaaaataaacctttcctcaggtcgcttt 74

                                                                       
Query: 541 tgtattttgctgcagcgcctagatgagtaattaatatagtgttcagatcacagaggataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tgtattttgctgcagcgcctagatgagtaattaatatagtgttcagatcacagaggataa 14

                        
Query: 601 gaaaagatacata 613
           |||||||||||||
Sbjct: 13  gaaaagatacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)