Query= MSMg01no313_d09.b1 MSMg01no313_d09.b1 CHROMAT_FILE:
MSMg01no313_d09.b1 PHD_FILE: MSMg01no313_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:39 2005
(807 letters)
>mm_chr6_99743766_99744970
Length = 1205
Score = 1241 bits (642), Expect = 0.0
Identities = 755/802 (94%), Gaps = 22/802 (2%)
Strand = Plus / Plus
Query: 18 gaatt-cataagggtagcaacacaatacctcagcggtgaggtggaaaatagaagcaacag 76
||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 212 gaattccataagggtagcaacagaaaacctcagcagtgaggtggaaaatagaagcaacag 271
Query: 77 tatctttagaactaaagaataaaatcactcacatttgagataaaatgaatttatgcatca 136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 tatctttagaactaaagaataaaatcactcacatttgagataaaatgaatctatgcatca 331
Query: 137 aaagatgggggtgtgtggatgcagaaagactttggaatgtgtcaacggaaagtgcacgct 196
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 332 aaagatgggggtgtgtggatgcagaaagactttggaatgtgtcaacggaaagcgcatgct 391
Query: 197 ctgaaggagagatttaaaaggattttgttg--------ttgtttgtttgtttgttaaatt 248
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 ctgaaggagagatttaaaaggattttgttgttgtttgtttgtttgtttgtttgttaaatt 451
Query: 249 acctgggcctagtggctcatgggacagtagcaaaactaaagtttaactttcttatcacag 308
||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 452 acctgggcctagtggctcatg---tagtagcaaaactaaagtttagctttcttataacag 508
Query: 309 gggtctaaagagaaggaaaaggcctaatatataaaattcttgagaaggagcaatggctag 368
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 509 gggtctaaagagaaggaaaaggcctaatatataaaattcttaagagggagcaatggctag 568
Query: 369 aaatttcccccaaatctgataaaaatgaataaactttcagagtcactaagtccatc-ata 427
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 569 aaatttcccccaaatctgataaaaatgaataaactttcagagtcactaagcccatcga-a 627
Query: 428 aaatggacaatctacccagctgcatcagcatgaaacttctgaaaactgaagaaagagacc 487
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 628 aaacggacaatctacccagctgcatcggcatgaaacttctgaaaactgaagaaagagacc 687
Query: 488 aagaaatcccgaaagcagccagagagccatagctgtatgcctcataggaggctagcatct 547
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 688 aagaaatcccaaaagcagccagagagccatagttgtatgcctcataggagactagcatct 747
Query: 548 ggactgactacacacttctacaaaaggggcaggttccagaatgggctgtacaactcacaa 607
||| || |||||| |||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct: 748 ggattggctacac--ttctacaaaaggagcaggttctagaacgggctgtacaactcacaa 805
Query: 608 aacactaagaccagcaggctggagctctgttctagcaaggagtccctccaggaaatgggt 667
||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 806 aacactaggaacagcaggctggaactctgttctagcaaggagtccctccaggaaatgggt 865
Query: 668 gttgtggatttggtctatcacttat-----gttaatttggttccccgaattacatgggaa 722
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 866 gttgtggatttggtctatcacttatattatgttaatttggttccccgaattacatgggaa 925
Query: 723 ttcatttgtctacataagacgctgagagtccctgcccccagttggttctgattggtaact 782
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 926 ttcatttgtctacataagacgctgagagtccctgcccc-agttggttctgattggtaact 984
Query: 783 aaagttgctggcagccaatggc 804
||||||||||||||||||||||
Sbjct: 985 aaagttgctggcagccaatggc 1006
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 807
Length of database: 1205
Length adjustment: 10
Effective length of query: 797
Effective length of database: 1195
Effective search space: 952415
Effective search space used: 952415
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_d09.g1 MSMg01no313_d09.g1 CHROMAT_FILE:
MSMg01no313_d09.g1 PHD_FILE: MSMg01no313_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:39 2005
(361 letters)
>mm_chr6_99782064_99782826
Length = 763
Score = 605 bits (313), Expect = e-177
Identities = 350/363 (96%), Gaps = 2/363 (0%)
Strand = Plus / Minus
Query: 1 gaatgggatctacaatgatttaaaaaaagaaaactggaattcacaagggctcactggtat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 563 gaatgggatctacaatgatttaagaaaagaaaactggaattcacaagggctcactggcat 504
Query: 61 tttgaccaattggtataagaatgaaagccatgtgtgatgctagacaagaacctggtt--t 118
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 tttgaccaattgatataagaatgaaagccatgtgccatgctagacaagaacctggttaaa 444
Query: 119 aaaaaaaaatctccttcagatgactccatattctctaaagcagcagtctgagtcttaaac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaaaaaatctccttcagatgactccatattctctaaagcagcagtctgagtcttaaac 384
Query: 179 accctctaccatgagtagagctgtcctgaccaggacaggaccacaaaaactccagttgct 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 accctctaccatgagtagagctgtcctgaccaggacaggaccacaaaaattccagttgct 324
Query: 239 gagaaaatgcattcttccactccataaataaatttatatttgctttttaacttcttgaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagaaaatgcattcttccactccataaataaatttatatttgctttttaacttcttgaga 264
Query: 299 ttatggcaaggcgtctgaatcctcttaaaactgatggattgggtcaggtgaggttgctca 358
|||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 ttatggcaaggcatctgaattgtcttaaaactgatggattgggtcagatgaggttgctca 204
Query: 359 gct 361
|||
Sbjct: 203 gct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 763
Length adjustment: 9
Effective length of query: 352
Effective length of database: 754
Effective search space: 265408
Effective search space used: 265408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
