Query= MSMg01no313_e19.b1 MSMg01no313_e19.b1 CHROMAT_FILE:
MSMg01no313_e19.b1 PHD_FILE: MSMg01no313_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:50 2005
(409 letters)
>mm_chr6_82848833_82849641
Length = 809
Score = 710 bits (367), Expect = 0.0
Identities = 397/411 (96%), Gaps = 10/411 (2%)
Strand = Plus / Plus
Query: 4 ggaattcgcagggtaaccagtccactttgacattgctgttcaagaccaggcttctatttg 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcgcagggtaaccagtcaactttgacattgctgttcaagaccaggcttctatttg 263
Query: 64 tctcactttgagttctgacc----cccccttctatactgcatgcagcaactagccccacc 119
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 264 tctcactttgagttctcacctaaac----ttctatactgcatgcagcaactagccccacc 319
Query: 120 cctccccgtgggagatgctctc-taagtagtcattaatctgacatgatctgacatcagaa 178
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctccccgtgggagatgctc-cataagtagtcattaatctgacatgatctgacatcagaa 378
Query: 179 taagatgtcatttggggaaataatccagaagctactgagtattgttcttaaccaacagga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taagatgtcatttggggaaataatccagaagctactgagtattgttcttaaccaacagga 438
Query: 239 cacagcacagcatgttgctcattgcagaacgagaatactggcagagctcaagggtcagcg 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacagcacagcatgttgctcactgcagaacgagaatactggcagagctcaagggtcagcg 498
Query: 299 tggctgatagacagggcgtggtacagagcaggcagacttgggttcaaatccagcttctgt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggctgatagacagggcgtggtacagagcaggcagacttgggttcaaatccagcttctgc 558
Query: 359 cacttcttagctgagccttgaacaacttgagctctgggaccttgcataaag 409
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cacttcttagctgagccttgaacaacttgagctctgggaccttgcataaag 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_e19.g1 MSMg01no313_e19.g1 CHROMAT_FILE:
MSMg01no313_e19.g1 PHD_FILE: MSMg01no313_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:50 2005
(379 letters)
>mm_chr6_83029606_83030384
Length = 779
Score = 694 bits (359), Expect = 0.0
Identities = 374/379 (98%)
Strand = Plus / Minus
Query: 1 actatatagcctaggctagccctgaacttgaagtgatcttccggcctgagctccccccca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 665 actatatagcctaggctagccctgaacttgaagtgatcttccggcctgagctttcttcca 606
Query: 61 ggtacaagctggcaagccagacatgccctcccctttcagtcccttgttttccccgtaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggtacaagctggcaagccagacatgccctcccctttcagtcccttgttttccccgtaaca 546
Query: 121 tgatgggcttacttacatgctgtggatttagcattagtcggtgacacagaacccttcgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgatgggcttacttacatgctgtggatttagcattagtcggtgacacagaacccttcgga 486
Query: 181 gatggcggacctcagctctcacagaacaccgaacatacttgttctaggaacagagaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatggcggacctcagctctcacagaacaccgaacatacttgttctaggaacagagaagga 426
Query: 241 ggggagggcacaggtgtctgagggaagggttgctgggagaaacggctccttcaaaggggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggggagggcacaggtgtctgagggaagggttgctgggagaaacggctccttcaaaggggc 366
Query: 301 cctcccctcaacccctctcacctgaaggatatttttattcttgtctttgccagaactgga 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 cctcccctcaacccctctcacctgaaggacatttttattcttgtctttgccagaactgga 306
Query: 361 tggaaacagatacaagtta 379
|||||||||||||||||||
Sbjct: 305 tggaaacagatacaagtta 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
