BAC Information

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BAC

Clone NameMSMg01-313F12
Chromosome6 (Build37)
Map Location 27,629,959 - 27,630,339
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313F12.T7 (MSMg01no313_f12.b1)MSMg01-313F12.TJ (MSMg01no313_f12.g1)
ACCAG435298AG435299
length1,3031,290
length of high quality
(start - end)
244 (501 - 744)383 (71 - 453)
definitionCHROMAT_FILE: MSMg01no313_f12.b1 PHD_FILE: MSMg01no313_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:56 2005CHROMAT_FILE: MSMg01no313_f12.g1 PHD_FILE: MSMg01no313_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGTCACTGGGGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTCAACTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAATGTTCAAC
ATCCTTAGTCATCAGAAAAATGCACATCAAAACAACCCTGAGATTCCACC
ACACACCAGTCAGAATGGCTAAAATCAAAAACTCAGGTGACAGCAGATGC
TGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTG
CAAGCTGGTATAGCCACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAAT
TAGACATAGTACTACCAGGGGATCCAACAATATCACTCCTGGGCATATAC
CCAGAAGAAGCGCCAACATGTAATAAGGACACATGTTCCACTATGTTCTT
TGCAGCCTTACTTATAATAGCAAGAAGATGGAAAGAACCCAGATGTCCTT
TTTTTTTTTACCCCCCCATAAAATGTGCTACCCCTATACAAAAAAGAACT
ATGCAGCTATTAAAAACAATGAATTTATGAAATTATTAGACAAATGCATG
GATCTGGAGGATATCATCCTAAGTAAGGTAACCCAATCACAAAAGAACAC
ATATGATAGGCACTTACTGGTAAGTGGATATTAGCCCAGAAGCTCGAGAA
TAACCAAGATACAATCTGAAAAACACATGAAACTCAAGAAGAAGGAAGAC
CAAAGTGTGGATACTTTGGTACTTCTCAGAAGTGGGAACAAAATACCCAT
CGGAGGAGTTACAGAGACAAAGTGTGAAGTAGAGACTGAAGTAATGACCA
TCCCGAGACTTCCCCAACTGGGGATCCATCCCATAAACAACCCCAAAACT
CATTAATACTTCTAACACTTGTTGAGTTTGTTCTTTGACAATTTTCTTAA
ACACATATAGTACACATTGATTACTGTCACCTTCACCTTCTCCAGTTTTC
CTCCCAACCTTAATACCTGCCCTGTCCTCCCAAAAAATTCCTTATTTAGG
CTCCTGGCCCAAATTAAGTGCTGGTCTCCCTCTTAATCAAAAAATCTTCT
TTTTGCCATTAACCTTTTCTCGCCTTTCCAAAGGAATTTAAATTAATTTA
ATCTCCCCCCCGTCCCTAAGGTGGTAACTCTTTTGGTTCCCTCTAAAAAA
TGGGATATTAACCCCTAAAACAGGCATTTGTTTGGCCCCTACCATTCTTT
TTTATATTACTAAGTGTCAATACCAAATAAATCGTTTCTCTTTCCTCCCG
CCTTCTCTTCNTACCCATTATTTAATTACTCTCCAAAATATCCGTGTACA
TCT
NNNCCTATGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGTTAGGCAAGGATACATAGTGAGACCA
TGTCTGAAACAAATCCTGTTTATCCTAGAGAGAATATGTGCCAGTAGTTT
TTCTTTTCTTATTACCATTTTTTCCTGAATATCATTGAAGTGTTAGGAGT
AAAGATTAGATAGTGAGTGTAGATACATCACAATAAGCAAGCACTATTTG
TCTGAAATGTTTTTATATTGGTATATTCTGATTCTCAATAGTATTGTCAT
CTATAGATCAATACATTTTTCACAGTCCAATATCCTGCCAGAACCCATGA
CCCATGCCATTTTCCCAAAGTTAACCCTGGTTTAGGACAGGGTCTTTTTC
AATCTGAGCACTTAAGTCAGGATTTCCTGGGCTGCTTGTGAAAGTTTTTT
TTTTTCCCCCCCCCCANGGGGNGACCTCCCTCCAAAAAAAAGGGGGGGGG
GTGNTNTGTNTTGCCNTNNTCTCCNNCGTGGTTGTGTTNNGAGGTGGGTC
CTTTAGGGAACAATTAGACTTGGGGAGGCCATGAGAATGGAGGATCTATG
ATCTGATTAGCTCTTTTATATGAAGGGGAGGGTACACTTTAACTTCTTTT
TTAGTTCCCTGATATAGCAAGAAGGCAGCTCTCTGTGAATCAGAAGATGT
TCTTGACCAGACCATGCCTATACTATACTCTAGCTCTGGACTCTCAGCTT
CCTGACTCTATTAAACCTATGACCCTGACTTAAACTATTTTTTCCATACA
ATCTTCTTACCACCTTATTCAGAAACTGGATCTTCTACCCTCACGAATAA
CTTCTTGGAATCGTACCCTTCAGGTAGTATTATCTCTTCATTTGTGTCTC
CAATCCATCTTACATTACCGGCTCTTCTCCGTCCATCTTACTTTCACTAT
AAACTCCCCTCCTCTATCTCTTTCTCTATACTTTACTAATCCACCTACAT
GCTCTCTATTATCTTTCTATTCTAACCCTTTTTCTATACTCTTTTTCATC
TTCTCTTTTCCCCTCATAACCCCTTTCCTGTTTCTCCTATTTCCTTTCTC
TTTTCATCCTCTACCTTTCCCCTTCTTACTTTCTCCTATTACTCTCATCC
TATCCTTCCTCTTTTTATTTCATAACACTCCTCTCTTTTCCCACTCTTCC
CTCTCACCTATCTACTTACATTCCTCCCATCTGCCACTTATGACTTTATC
TCCTCTTATCACCTCTCTTCACCCTATCTCTCCTCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_f12.g1 MSMg01no313_f12.g1 CHROMAT_FILE:
MSMg01no313_f12.g1 PHD_FILE: MSMg01no313_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:56 2005
         (383 letters)



>mm_chr6_27629766_27630548
          Length = 783

 Score =  648 bits (335), Expect = 0.0
 Identities = 369/381 (96%), Gaps = 2/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttaggcaaggatacatagtgagaccatgtctgaaacaaatcctgtttatcctagag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 574 catgttaggcaaggatacatagtgagaccatgtctgaaacaaatcctgtttatattagag 515

                                                                       
Query: 61  agaatatgtgccagtagtttttcttttcttattaccattttttcctgaatatcattgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agaatatgtgccagtagtttttcttttcttattaccattttttcctgaatatcattgaag 455

                                                                       
Query: 121 tgttaggagtaaagattagatagtgagtgtagatacatcacaataagcaagcactatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgttaggagtaaagattagatagtgagtgtagatacatcacaataagcaagcactatttg 395

                                                                       
Query: 181 tctgaaatgtttttatattggtatattctgattctcaatagtattgtcatctatagatca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctgaaatgtatttatattggtatattctgattctcaatagtattgtcatctatagatca 335

                                                                       
Query: 241 atacatttttcacagtccaatatcctgccagaacccatgacccatgccattttcccaaag 300
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 334 atacatttttcatagtccaatatcctgccagaacccatgacccatgccatcttcccaaag 275

                                                                       
Query: 301 ttaaccctggtttaggacagggtctttttcaatctgagcacttaagtcaggatttcctgg 360
           ||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||
Sbjct: 274 ttaaccctggtttaggacagggtcttccacaatctcagcacttaagtcaggatttcctgg 215

                                
Query: 361 gctgcttgtgaaag--ttttt 379
           |||| |||||||||  |||||
Sbjct: 214 gctgtttgtgaaagcattttt 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)