BAC Information

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BAC

Clone NameMSMg01-313G04
Chromosome6 (Build37)
Map Location 16,507,976 - 16,508,406
singlet/doubletsinglet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G04.T7 (MSMg01no313_g04.b1)MSMg01-313G04.TJ (MSMg01no313_g04.g1)
ACCAG435329AG435330
length1,2571,292
length of high quality
(start - end)		529 (85 - 613)843 (81 - 923)
definitionCHROMAT_FILE: MSMg01no313_g04.b1 PHD_FILE: MSMg01no313_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:01 2005CHROMAT_FILE: MSMg01no313_g04.g1 PHD_FILE: MSMg01no313_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCATTTTNNNNNNNTCATTGGGCGCTAAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTGCCATAAAATCATCTGCGTTTGGGTGTTTTTTGGTTGGA
AGATTTTCAATGATTCCTTCTATTTTATTAGCAGTTATGTGACTGTTTAG
ATAGTTTATTTGATCCTGATTTCACTTTGGTATGTGATGTCTGTCTAGAA
AATCATACATTTCATCTAGATTTTCCACTTGTGTTACGTATAGACTGATG
ATTTTTTGAATTTCCTCAGCTTCTATTTTTATGTCTCACTTTTCATTTAT
GGTTTTGTTAATTTGGATACTGTCTCTGTGCCCTTTAGATAGTTTGGCTA
AGGGTTTATCTATCTTATTGGTGCTCCCAAAGAACTAGCTCTTCGTTTTG
TTGATTCTTTTTTTTTTTTTTTTGGTCTCTTTGTTTCTAATTGATTGGTT
TCAGCCTTGGGTTTATTTCCTGACATCTACTCCTCTGGGGTATGTTTTCT
TCATTTTGTTCTAGAATTTTCAGGCATACTGTTACATTGCTAGTGTATGA
TCTCTCCAATTTTTTTATGCAGGCACTTAGTGCTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTNTNTTTCCCCTTAACACGGTTTTCCCTGGGTCCCA
TAATTTTGGGTACACGGGGCCTTCTTTTTTTTTAAATTCAAAAAAGCCTT
TAATTTCTTCCTTTTTTTCTTCCTGGCCTAAGTATTCTTGGACTATAACC
GTTCTTCCCTTTTCCTGGAACTTTTTGTTTTTTCTTTTTGCCTTGATTTT
TTCTTCCTACTGCCCCCTATCCTTTCTCTTATTTCCACTATCTCCTCTGT
CTATCTTCTTTCTTTCTTTTATCCCTATTTAATTCTTCTTTTTCTACTTC
TTACTCTTTTTTCTTTCTTCCATTCCTTTTTCTCCCTTCTCCTCTTCCAT
CTCCTTTCTTTCAATACTCTTTCAAATCCTTTTCTCTTCATCTTTCCCTC
CTCATATTCCTTCACTTTTTCTTACTTTTTCTTTTCCTTTACCTTTCTCC
TTTTCCTCTTCTTTTCTATTTCTATATATTCTTTCTCTTTTTCTCTATTT
TCCTTTCTTCCCCTTTCTTTATTCCTTTTCTTCTCTCCTCTTTTTTTTTC
TCCTATTTCATACTCTCTTTCTTTTTTTTATTCCACTCTTCTTATTCCTT
ATTTCTTACTCATTTTTATACTTTCTACTACTTCCCTTTTCTTCTCTTCT
CTTTATG

NNTTATCANNNNNAATTGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAGAGGTGGATGTGAG
GGACAGAGAGGGGAGAGAGAAAGAAAGAGGGAACGAAAATACTTTAGTTA
TTTGTGAATGACTGAAGAAATATTTATTCACAACATTATATTCTATGTCA
ATTTTCCTTAGATATAATTTTAAAAGTAGACATTCATGGAGAATAAAACT
TGTAATTTTATTGATCAAGTTTTTGAAATCTAGGTTGGCCAACAGGATGG
GACTTCTGGCTCAGGGCATGACTCTAAAATTGAATTTACCCTAAAGCTGT
GCATGTTTACCTCATTTGCTTCATTCCAGCTTAGTCTGGTTCCAGACTGA
TACCCAGAGGATAGACTTTCTTACCCTAAGCCAGGCCCATTCCATATCTT
CTAACACCATATCTTTGTGGTAATTGTATGAAATAAAAAAGAATACTGGC
TTTCAGAGACAGTAAAGGGACATTTTTTCACACATCACACATCCTTCAAT
ATTAAAATTATTCTAATGCTGAAATATTAAAGCAGGCAGTCTGTCTGATT
AAAAACCCCCCTTTCTTAGTTGGAAATTGATGCTACTTCTAGCGTCTCAC
CGTTGCTTTTACTTTACGAAGAGTGTGTACTGAAGCTCACCAATGCAGAC
AACAGGTTTCTGTCTCTTCCCCTCACATGACAGTGTTTCTGCTCGCTTCC
GGCTCACTCATTCCCAAAGCAGAAATATTTTAAGAAGCGAATTTAAACAA
GTGTTTCTTCACTTTATTGAAAAGATTTTAATCATCTGCAATGGTTTAAG
ATCTGTGGTGTGGTGATGAGGCTTTTATCAGTGACTGAAGAACACATGGC
ACATACAGTGTAGCTAGCTGCNAATGAAGGCCAGCGTGCCAGCATAAACG
CAAATGGACGCTAAAATATCACTGTCTACTAGACCATTTGAAAACTGTGG
ACTTAACCCAGCCTTTACAACATTACAATAATTTGGTTTCCTGGTTGGCG
GGTTTGTAAAGGGAAAAATATTCCTACCCTCCCCCGAAAAAAAAAACAGT
TGGGAACTTTTCTTAATCCCGGCTCCAAATGGTTCCCAAACCAAAAACAT
TTTTAGACCTCCCCTGAGAGCCTGGATTGGGGATTTTTCTCTTTTGTGAC
TTTTTTTTTTGGTCAATTATTTGAGAAAAAAAATTAAACCCCCCCCCCCA
CTTCTATATGGGAATAAAACCCACGGAAAGGCCCGTAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g04.g1 MSMg01no313_g04.g1 CHROMAT_FILE:
MSMg01no313_g04.g1 PHD_FILE: MSMg01no313_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:01 2005
         (843 letters)



>mm_chr6_16507366_16508608
          Length = 1243

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/431 (98%)
 Strand = Plus / Plus

                                                                        
Query: 411  gaatactggctttcagagacagtaaagggacattttttcacacatcacacatccttcaat 470
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  gaatactggctttcagagagagtaaagggacattttttcacacatcacacatccttcaat 670

                                                                        
Query: 471  attaaaattattctaatgctgaaatattaaagcaggcagtctgtctgattaaaaaccccc 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  attaaaattattctaatgctgaaatattaaagcaggcagtctgtctgattaaaaaccccc 730

                                                                        
Query: 531  ctttcttagttggaaattgatgctacttctagcgtctcaccgttgcttttactttacgaa 590
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 731  ctttcttagttggaaattgatgctacttctagcgtctcaccattgcttttactttacgaa 790

                                                                        
Query: 591  gagtgtgtactgaagctcaccaatgcagacaacaggtttctgtctcttcccctcacatga 650
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791  gagcgtgtactgaagctcaccaatgcagacaacaggtttctgtctcctcccctcacatga 850

                                                                        
Query: 651  cagtgtttctgctcgcttccggctcactcattcccaaagcagaaatattttaagaagcga 710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  cagtgtttctgctcgcttccggctcactcattcccaaagcagaaatattttaagaagcga 910

                                                                        
Query: 711  atttaaacaagtgtttcttcactttattgaaaagattttaatcatctgcaatggtttaag 770
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 911  atttaaacaagtgtttcttcactttattgaaaagattttaatcatctgcgatggtttaag 970

                                                                        
Query: 771  atctgtggtgtggtgatgaggcttttatcagtgactgaagaacacatggcacatacagtg 830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  atctgtggtgtggtgatgaggcttttatcagtgactgaagaacacatggcacatacagtg 1030

                       
Query: 831  tagctagctgc 841
            |||||||||||
Sbjct: 1031 tagctagctgc 1041


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 843
Length of database: 1243
Length adjustment: 10
Effective length of query: 833
Effective length of database: 1233
Effective search space:  1027089
Effective search space used:  1027089
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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