BAC Information

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BAC

Clone NameMSMg01-313J20
Chromosome6 (Build37)
Map Location 144,026,595 - 144,026,915
singlet/doubletsinglet
Overlap geneSox5
Upstream gene5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313J20.T7 (MSMg01no313_j20.b1)MSMg01-313J20.TJ (MSMg01no313_j20.g1)
ACCAG435490AG435491
length1,2621,266
length of high quality
(start - end)
343 (502 - 844)322 (73 - 394)
definitionCHROMAT_FILE: MSMg01no313_j20.b1 PHD_FILE: MSMg01no313_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005CHROMAT_FILE: MSMg01no313_j20.g1 PHD_FILE: MSMg01no313_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATTTNNNNNGACATTGGGCGCTAAGACTCACTAAGGGAGAGGATCCGC
GGAATTCAACTATCACTCACAAATAGAGTGTGCCAGTGCGTTGCAAGGAA
GGTAATCAGAACTGGCTTTTGGAAGACCACAAGAACTTTTTGTCTTTTTC
GTGTCAGAAGCAGTCTCTGTCACATATGATCCTTTTGTGAGCGATTCTCT
TTATAACCCACATGAGGGACTTAACTCCCCTACTCTCCCCATGATCAACA
CTGTAGATTGATGCTTTTGGCTAGATATCCCAGGAACGCCTCACAGAACT
TGGGTGCACTTTGCTGCACATGAGGAATGTTAGGGTCCAGATGCAACGAT
TCAGTGCTATGCCGGGTCTCACAGGGACACCCACCTGCTCTGTGGATGCC
TCCCCTCCACTCATGCTCTCTTCCATCTTGCAGGCTGTCAGACCTTGCTC
CTTTATTTTCTCTCGACAAATGGTTCCCCGAAGGTCCTGAAAAAAAAGAT
GAAGGTGACTCGCCTCTGCTTCCCTTTCTCACCAAGCTGTTGTCTTAAGA
TGAACCCCGCAAATGTGTGTGAAAACTCTGAAGACTCCAGAACCTCAAAT
CCAAGACAAAACCACGCAAATAAAGCCGAGGAAGAGCCCGAAGCTTTTCC
CATGTACAAATTTTGCTTGCACAGAACATCCATTAAACTTAGGCTCATCT
CTTATTTGTCTCTCAATTTTAAGTAGACATATATATATATATATATATAT
ACATATATATATGCTAACTTTTCAATGCTACTAAGCGTGGATTTTGTGAG
TGTGTGTGTTTCTCTCTGTGTGTATGTTCTATGTGTCTGTGTATGGATAT
ATTTGTATGTTTTGGAGACAGTATCCCACGTAGGCAAGGCTAGCCATGGA
CCCCCTATGTAGTCAAGGATGGTCCTCAACTTGAAGTTATTCTGCATTTT
CCCCCGAGAGCTAGGGTGCATGTCCCTCTGCCTGGGTTTAAAAAGGGGTA
AGGACCCAAGCCCAAAATGGGTGCCTCTAAGCCAAGCTTTCTACAACCGG
AACTTACCCCCCCCTCTGGTCCCCCAAACCTCTATAAAAATACTCCTACC
TCCGGAAGGGCTCCACAATTAATACCTTCTATAAGGTCACTCACCTGGTC
GAACACTTTTTTTTATGTTTTCTGGCGATCCATAATTTTGGTAAATAATC
CCCCCCGCCCCTCATGCTCATTGGCCATCCTCCCCCTTCTTCCCTATTAC
ACAATTCTGTCT
NNNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAAACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAAGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAATT
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGT
TTTTTTTTTTCCCCCCCCCCCNNNAANNGACCCCCCCACAAAAAAAAGGG
GGGGCNTCTNCNCNNTGNANTACTACTCCNCTATTAAAAAAAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGTCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACTTGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC
CTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAATTACCGAGACCAA
GTTTGGAGCTGAAATGAAAGGATGGACCATGTAAAGACTGCCTTATCCAG
GGATCCCCCCCATAATCAGCATCCAAACGCTGACTCCATTGCATAACCTA
TCAAGATTTTATCCGAAGACCCCCATGTACCTGTCCCTTGTCAAAATATG
CCCCGGGCCCAACTAAACACAAAAATGGATGCCCCCCAGTCACCTAACGG
ATGGAATCCCAGCCCCCCCATGGTCCCGACTTCAATACAATACCCCCGGT
ACCTAAAGGGATCCTGCNCCCTCTATGGGTGGATCCCCTTTTTCGAACTT
ACCCTTCTCCCCGGATACTCTTGATCCTTACGCGGCATACTCATCCACAA
AAATGCCTATTCGCTCCTTCTATTGCTAACATAAAGCCCTATTCCACAAC
CACTCTTTTTTTTCTCCCATTCCCGTACTCCCGCTCACCCCTAATCTGAT
ACTGTTCTTCTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_j20.b1 MSMg01no313_j20.b1 CHROMAT_FILE:
MSMg01no313_j20.b1 PHD_FILE: MSMg01no313_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:31 2005
         (343 letters)



>mm_chr6_144026395_144027137
          Length = 743

 Score =  551 bits (285), Expect = e-161
 Identities = 318/343 (92%), Gaps = 22/343 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtgactcgcctctgcttccctttctcaccaagctgttgtcttaagatgaaccccgca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 201 aaggtgactcgcctctgcttccctttctcaccaagctgttgtcttaagatgaacctggca 260

                                                                       
Query: 61  aatgtgtgtgaaaactctgaagactccagaacctcaaatccaagacaaaaccacgcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgtgtgaaaactctgaagactccagaacctcaaatccaagacaaaaccacgcaaat 320

                                                                       
Query: 121 aaagccgaggaagagcccgaagcttttcccatgtacaaattttgcttgcacagaacatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagccgaggaagagcccgaagcttttcccatgtacaaattttgcttgcacagaacatcc 380

                                                                       
Query: 181 attaaacttaggctcatctcttatttgtctctcaattttaagtagacatatatatatata 240
           |||||||||||| |||||||||||||||||||||||||||||||||||            
Sbjct: 381 attaaacttaggatcatctcttatttgtctctcaattttaagtagaca------------ 428

                                                                       
Query: 241 tatatatatacatatatatatgctaacttttcaatgctactaagcgtggattttgtgagt 300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ----------catatatatatgctaacttttcaatgctactaagcgtggattttgtgagt 478

                                                      
Query: 301 gtgtgtgtttctctctgtgtgtatgttctatgtgtctgtgtat 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgtgtgtttctctctgtgtgtatgttctatgtgtctgtgtat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)