Query= MSMg01no313_p03.b1 MSMg01no313_p03.b1 CHROMAT_FILE:
MSMg01no313_p03.b1 PHD_FILE: MSMg01no313_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:14 2005
(413 letters)
>mm_chr6_98910892_98911704
Length = 813
Score = 791 bits (409), Expect = 0.0
Identities = 412/413 (99%)
Strand = Plus / Minus
Query: 1 aatgaacctctgttagccttgagaggtaatggctacagatgtttccctcctggagtcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatgaacctctgttagccttgagaggtaatggctacagatgtttccctcctggagtcctt 554
Query: 61 actgcagggctccactccaatccaatgcaaaagctttggagactctcttaccagcactgg 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 actgcagggctctactccaatccaatgcaaaagctttggagactctcttaccagcactgg 494
Query: 121 acatgagtttccctatatccatgtaggtaaaatatgcctggacccacaagggccatgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acatgagtttccctatatccatgtaggtaaaatatgcctggacccacaagggccatgtgt 434
Query: 181 ctgccaacatattaactaccaagcaagggaggtatgcatctttaaatacataatgaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgccaacatattaactaccaagcaagggaggtatgcatctttaaatacataatgaatgt 374
Query: 241 tttcttaccaatgaagaaaagggttggtcaatcccattcccagtttgcccttgaactggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttcttaccaatgaagaaaagggttggtcaatcccattcccagtttgcccttgaactggt 314
Query: 301 cttagtgagaggaaaagagagtcagaatgtctcagagctgctgatctgtgacttttcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttagtgagaggaaaagagagtcagaatgtctcagagctgctgatctgtgacttttcaac 254
Query: 361 atttctttccttgtttcgctatttaaaatccagttagaatgtctttaccaatg 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atttctttccttgtttcgctatttaaaatccagttagaatgtctttaccaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_p03.g1 MSMg01no313_p03.g1 CHROMAT_FILE:
MSMg01no313_p03.g1 PHD_FILE: MSMg01no313_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:14 2005
(658 letters)
>mm_chr6_98748905_98749965
Length = 1061
Score = 1147 bits (593), Expect = 0.0
Identities = 646/669 (96%), Gaps = 11/669 (1%)
Strand = Plus / Plus
Query: 1 gctgtcaccagactttactcctaaaacggaggcatgtgtcaactgagaagtgaccgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gctgtcaccagactttactcctaaaacggaggcatgtgtcaactgagaagtgaccgttac 252
Query: 61 tctcatgtgcctagtctgaaccattgaagcgcacctctgtgggtcttgatattgaccata 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 tctcatgtgcctagtctgaaccattgaagcgcacctctgtggatcttgatattgaccata 312
Query: 121 aacaaaacacatgggaa--------cttttctcagaaagaagtcaaaatagactgcacat 172
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct: 313 aacaaaacacatgggaaaacctcttcttttctcagaaagaagtcaaaacagactgcatat 372
Query: 173 acacaaagatgggggagacgcatccatccaaaaaaaaaaaa--gaaaaacgagtggggaa 230
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 373 acacagagatgggggagtcgcatccatccaaaaaaaaaaaaaagaaaaacgagtggggaa 432
Query: 231 gagagaaatgtttgcgcccgcattcttcgttccatctggcactcgattggagcgcactca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagagaaatgtttgcgcccgcattcttcgttccatctggcactcgattggagcgcactca 492
Query: 291 ttcgggcaaatgttgcgctcacatccctacactacaaagcctattatcctctaaggaatg 350
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 493 ttcgggcaaatgttgcgctcacatccctacactacaaagcctaaaatcctctaaggaatg 552
Query: 351 tctggaccggacagtgtatggaagcaacacaccgtagcccagtagcccagtgtggtccct 410
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctgggccggacagtgtatgggagcaacacaccgtagcccagtagcccagtgtggtccct 612
Query: 411 atatgcagtgcccagaaaaaactgggcctttaccaaaaggaagtgaagacagaccgcagc 470
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acatgcagtgcccagaaaaaactgggcctttaccaaaaggaagtgaagacagaccgcagc 672
Query: 471 acacggaaatagcgcccgtgcctttctgccatctggaacaggggctcacgtcagggggag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acacggaaatagcgcccgtgcctttctgccatctggaacaggggctcacgtcagggggag 732
Query: 531 gagaaagctgcttccccagtagttacagtagatgaagagtgttatacccaaatcat-gag 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 733 gagaaagctgcttccccagtagttacagtagatgaagagtgttatacccaaatcatagag 792
Query: 590 ggtccagtcaggcttttccttcaaaactgccaggatcgagcacctgatcatataccatgt 649
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 793 ggcccagtcaggcttttccttcaaaactcccaggatcgagcacctgatcatataccatgt 852
Query: 650 taaacctcc 658
|||||||||
Sbjct: 853 taaacctcc 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space: 681048
Effective search space used: 681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
