BAC Information

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BAC

Clone NameMSMg01-313P21
Chromosome6 (Build37)
Map Location 39,326,385 - 39,326,700
singlet/doubletsinglet
Overlap geneSlc37a3
Upstream geneRpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik
Downstream geneRab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P21.T7 (MSMg01no313_p21.b1)MSMg01-313P21.TJ (MSMg01no313_p21.g1)
ACCAG435760AG435761
length1,2151,204
length of high quality
(start - end)
368 (124 - 491)320 (498 - 817)
definitionCHROMAT_FILE: MSMg01no313_p21.b1 PHD_FILE: MSMg01no313_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:20 2005CHROMAT_FILE: MSMg01no313_p21.g1 PHD_FILE: MSMg01no313_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATTTTNNNNNNACCTTGTGGGCGCTATAGACTCCTATGGGAGAGGATC
CGCGGAATTCTATTCTTTAAACAGCCGTTTAATGACACACTCGCCCCTGT
ATCCTGACACCCTTGCCTAAAGATATTACCCCACCCCCATGAGTCAAACC
CTAATTTTTTTGTTCGTTTCTCGTTTTTGATTTGGGGTTTGAGAGGGAGT
TTGTTTGGTGTTGAAGCATCGGATCCCATTACAGGTTTTTGTGAGCTACC
ATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAATAAGTAC
TCTTAACCGCTGAGCCATCTCTCCAGCCCTTTGTTTGTTGTTTTTGAGAC
AGTCTCTCTACATAGCCCTGGCTGTCCTGGAACTCACTACGTAGACCAGG
CTTTTTTCAAACTCTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA
GGTGTGTTTTTTTATGCCCGGCCTAAATCCCACCTTTTAGCCTCAACAAT
AGATCAGCAAGGGACCTCCTCCCAAAACACTTCACACCCTACTCTACTCA
CCCATGACATTCCAGCCCCTCCCAGCAAAGGTCTCCATCCTAATAGGCAC
GATTCCCTAATTATAAACAGCCAACAACTAAGTAAATATCTGGCTTTCAC
CTACTTGGTCAGCAGCTCCTGCAGAGGACCTGGGTTTAGTTCCCAGCACC
CACATGCTGCTCACAATCACCTGTAACTCCGCTTCCACTGGATCTGATAC
CCCCGACTGGCCTTCTTAGACTCCTGCATATATGTGGTGGNACCCATACA
CTCAAGTAGACAAGCATACCTACACATAAAAATAACATATAAATAAACCT
TTGGAAATAGTGACTCATTTTATCATTATTTTTTCAGCCTACTTTCTCCC
TAGACAGGACCCTCTTGACCTTGACATTGGCTTAAGCCGCTGTCCCTACC
TTTATAAAAGCCCACCTCTCTAGTTTTTCTGTGGGGTGAAACCCCTTTAT
TGAAACCTCTACCCCCGGTCTTTTCCCTAAGGAATTTTTTCCCAATGGAA
ATTCATTGGGGTTTTTTTGGAGATTTTCTTCCTATATGACACACGTCTTG
GCCTTCTCCTCCCTCTTATAACCCCCTATAAAGTTTCTTACCTTCCTCAT
TATTTTTCTTTTTCTATCTTTCCACCCCCCTCATAAATATCCTCCTTTAA
ACCTCGTGTCTCTAC
NNNTTTCCACAGGGTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTCAGCTTCTTATTCGAATGTCAGAC
TTTGGTTGCTTCTTATTTGTAGAGCGTGGCCTGTTCTTAATTTTGTTAAG
ACAATGGGGATGTGTCCACTTTTAACATTTTCTGCAATATGTTCACCGAT
GCCGTGATATTTTACTGAAATGTTTAGAGGATACCTAGTTGCCAGGGCGA
GCCTCTTTAGCCATTGCTTGATGTCTTCACACACATTTCTGTTTACGAAA
CAATCACTGATGAAGAGAACACCTCGACTACTGTGGTAGTTGAATTATTC
TTTTGCCACTTGCCAGATGTTCCTTGTAAGTAAAACAGAGTCTGCCCTAT
ACACACAGTAAATCCTTTCATTTAATCCTTAAGTGAGGAAAGAAGTGATT
TTTTTTTACCCCCCCTTTAGTGTCAGAGTTCTCTGTAAAAAAAAAGGAGT
TCAGTGCTCATTGTTTAAGGTTTTGGATGAGTGCCTGGTCCTCAAGTGAG
GATGACATGCTCTTGTTGCAGTGATAACTGGCACGATTAGGGCTTTGTCT
GAAGGGCAGAGGAGAAAGTAGTTGTCTTTGAAAGAAAATAGGGAGAAGTT
GGCCTTAGGAACCCTGGTATAAATGGATGTGGTTTTAGGAACCCTGAAAC
AGCTAGCTAAGTCCTTAACATCTGTGGTAATGCGGCAGTTTTAAGAAAAA
GTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGATATACACCCACATCTTTTTCCCCTTTACCTTTTT
TTTACTCCTCTTTTCCCCTTTTTTTCCTCCTTTTTACTCTCACAATACTA
TTTTCCTACCCCTTTTCTCTATCTATCTTATCTTTCTTTTCATATCCATA
CTTCTTCTACTCTCTTATATTATATTTCATTCCTCTCTCTCATCCCTTTA
CTAATACTTACATCTATTTTCTTACCCTTCATTTCCCACACACCCCTTAT
TCCATCAATAACAATCTTTATCCCTTTATCTCCATATCACTTCTTCTTAT
TCTTCTACCATCTCTTACTCCCTTCTATAACTTATCCTTCTTCTCTCCTT
AATTATCTATCTATTTAACAAACTCTACATTACCCTTTACCTCATCTTGT
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p21.g1 MSMg01no313_p21.g1 CHROMAT_FILE:
MSMg01no313_p21.g1 PHD_FILE: MSMg01no313_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:20 2005
         (320 letters)



>mm_chr6_39326248_39326967
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcagtgctcattgtttaaggttttggatgagtgcctggtcctcaagtgaggatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agttcagtgctcattgtttaaggttttggatgagtgcctggtcctcaagtgaggatgaca 394

                                                                       
Query: 61  tgctcttgttgcagtgataactggcacgattagggctttgtctgaagggcagaggagaaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgctgttgttgcagtgataactggcacgattagggctttgtctgaagggcagaggagaaa 334

                                                                       
Query: 121 gtagttgtctttgaaagaaaatagggagaagttggccttaggaaccctggtataaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtagttgtctttgaaagaaaatagggagaagttggccttaggaaccctggtataaatgga 274

                                                                       
Query: 181 tgtggttttaggaaccctgaaacagctagctaagtccttaacatctgtggtaatgcggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgtggttttaggaaccctgaaacagctagctaagtccttaacatctgtggtaatgcggca 214

                                                                       
Query: 241 gttttaagaaaaagtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagag 300
           |||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||
Sbjct: 213 gttttaagaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagag 154

                           
Query: 301 agagagagagagagag 316
           ||||||||||||||||
Sbjct: 153 agagagagagagagag 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)