BAC Information

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BAC

Clone NameMSMg01-315C12
Chromosome6 (Build37)
Map Location 54,708,002 - 54,708,344
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315C12.T7 (MSMg01no315_c12.b1)MSMg01-315C12.TJ (MSMg01no315_c12.g1)
ACCAG435878AG435879
length728735
length of high quality
(start - end)
603 (126 - 728)343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no315_c12.b1 PHD_FILE: MSMg01no315_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:32 2005CHROMAT_FILE: MSMg01no315_c12.g1 PHD_FILE: MSMg01no315_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAGCTATTTCACAAGTGTCAGTGCCTTGGAAAAAATTGCCAC
AAAAGCTGTGTGGACCACTCAGACCGGCAGTGGTGGTATACACCTTTAAT
CCCAAAACTCATAAGGCAGAGGCAGGCACATCTCTGAGTTAGAAGGCCAG
CCTGGTTTAAAGACCAAATTCCAGGACAGCCAAGGCTACACAGAGAAACT
CTGTTTTGAAAAACCAAAAATAAATAAAATAAAATTAAGCTATTGAGAAC
TTTACAAATAGGTTTAAAAGCAAGAATGCAACTCTCCCAGTGAGAGCTGT
GGTGTGGAAAACTTCCTGGCTGTAACTAGACACAGCCATCCATCAAACTA
CATCTGATGAACCTATTCCCCCCCCTCAAATCAAGACACTTTTCTTGCAT
TGTTAGAGCGAGATGGCAGGTTTCCTCTAGAGAGGGAAGCATTGTGAGCT
GCACAGCAGGGAGGGTAACACAGCAGTGAGGGTCACACAGCAGTGAGGGT
CACACAGCAGGTAGGGTCACACAGCAGGGAGGGTCACACATCAGGTAGGG
TCACACAGCAGAGAGGGTCACACAGCAGGGAGGGTCACACAGCAGGGAGG
GCCACACAGCAGTGAGGGTCACACAGCAGTGAGGGTCACACAGCAGGTAT
GGTCACACAGCAGGGAGGGTCACACAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCCAGCACAGCTTGACGATCCCT
CTGATTTCTGTTTCCATGGCCCCCATGACAGAAGTGTGCCGCAGAGGATC
CCAGTATTCCTCTCAGCCCTTGACAAGAGCAGACACAGAGGAAACAAGTA
TTGCTACACACTGACTTATTCAGACTTTAAGCTCATAGCTGCTATGGCTT
TGAATGGATGTATTTCCCCAAAAGTCTTTGATTGAATAATCACTGAATAG
TGCAAAGAGTTGGGGAAATCTTTACAGTAAGTCACAAGTATTCACGAAAT
ACTTGTGAATGATTGGATGCTGTAGCTATGCTAACTGGCTATTTCCTGGT
TCTTGATAATGGTATTTACCACCCTCAAGAGGTGCGCAGAAATAACAAAG
TAGCAAGACGTTTTCTTCACAGACAAACTGCAGAAACTGTCGCAGGGAGC
AGCAGGCCACAGAGGGGCTGCGTTCAGAGCAGCAGGTTACTCTTTGGAGC
CTCAGGCTTTACAGGGATTAGGAGGGAGAGGAGTTGGTTTCTGGGAGTGG
GGTGTGGGTGTCTCTTTTTTTTTTTTCGCCTCTTCCTTTTTTTCTCCCGT
CTTCTCTGGCCGGCGCGGTTTTTGTTTTTTTTGCCCTTTTTACGTGCGTT
TCTCGGTTTTTCTGCTTCCATCTTCCTTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_c12.g1 MSMg01no315_c12.g1 CHROMAT_FILE:
MSMg01no315_c12.g1 PHD_FILE: MSMg01no315_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:33 2005
         (343 letters)



>mm_chr6_54707802_54708544
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccagcacagcttgacgatccctctgatttctgtttccatggcccccatgacagaagt 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 543 agcccagcacagcttgacgatccctctgatttctgtttccatgggcaccatgacagaagt 484

                                                                       
Query: 61  gtgccgcagaggatcccagtattcctctcagcccttgacaagagcagacacagaggaaac 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtgccgcagagaatcccagtattcctctcagcccttgacaagagcagacacagaggaaac 424

                                                                       
Query: 121 aagtattgctacacactgacttattcagactttaagctcatagctgctatggctttgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagtattgctacacactgacttattcagactttaagctcatagctgctatggctttgaat 364

                                                                       
Query: 181 ggatgtatttccccaaaagtctttgattgaataatcactgaatagtgcaaagagttgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggatgtatttccccaaaagtctttgattgaataatcactgaatagtgcaaagagttgggg 304

                                                                       
Query: 241 aaatctttacagtaagtcacaagtattcacgaaatacttgtgaatgattggatgctgtag 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatctttacagtaagtcacaggtattcacgaaatacttgtgaatgattggatgctgtag 244

                                                      
Query: 301 ctatgctaactggctatttcctggttcttgataatggtattta 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctatgctaactggctatttcctggttcttgataatggtattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)