Query= MSMg01no315_e08.b1 MSMg01no315_e08.b1 CHROMAT_FILE:
MSMg01no315_e08.b1 PHD_FILE: MSMg01no315_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:41 2005
(706 letters)
>mm_chr6_16353939_16355044
Length = 1106
Score = 1295 bits (670), Expect = 0.0
Identities = 694/702 (98%)
Strand = Plus / Plus
Query: 5 gaattcagcatagttactccccaaaccataagtaaatgcagaatagtcatacatgagcag 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcatagttattccccaaaccataagtaaatgcagaatagtcatacatgagcag 264
Query: 65 atatttagaattttgtgagccccatatgtagcctccctttcaacctcttcattaacagct 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatttagaattttgtgagccccatatgtagcctccctttcaacctcttcattaacagcc 324
Query: 125 tttaagtgctcttattggtagaggcaatgctcacgggtattatatgccagactatgcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaagtgctcttattggtagaggcaatgctcacgggtattatatgccagactatgcttt 384
Query: 185 ggtacttaatagcaatttaaaactctcacataagattaatattgtgtaagggtaatggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtacttaatagcaatttaaaactctcacataagattaatattgtgtaagggtaatggaa 444
Query: 245 actggcaatctgccaccaatgacttttgcaatgtctagatgaaggcaatcaagagttcta 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 actggcaatctgccaccaatgacttttgcaatgtctatatgaaggcaatcaagagttcta 504
Query: 305 aacattacaatggaataaattttgaagactttgccatgatttgaacttttattttctcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacattacaatggaataaattttgaagactttgccatgatttgaacttttattttctcct 564
Query: 365 taattagcaagcgattgcttacttcaaaattaactacagaacttaactttcttgtggaaa 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taattagcaagtgattgcttacttcaaaattaactacagaacttaactttcttgtggaaa 624
Query: 425 taccattcacttatttataaataaagatagaaggaacatgtcttgatactcttgcatctc 484
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taccatttgcttatttataaataaagatagaaggaacatgtcttgatactcttgcatctc 684
Query: 485 atcttcatctttcatatacacagattgagattttattcatagaaacaagatactcctatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcttcatctttcatatacacagattgagattttattcatagaaacaagatactcctatt 744
Query: 545 catatcctttcagactaaagttgccagtcttttatgtcttaaatacatgtctttgaataa 604
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catattctttcagactaaagttgccagtcttttatgtcttaaatacatgtctttgaataa 804
Query: 605 tgaaaaaaacaaacaaaaaaagctaactagcctaatttgcttcttctactctaaaatcct 664
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 805 tgaaaaaaacaaacaaaaaaagctaactagccgaatttgcttcttctactctaaaatcct 864
Query: 665 attgttaaaacaagaactgttaattagttagaactaattgct 706
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 attgttaaaacaagaactgttaattagttagaactaattgct 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no315_e08.g1 MSMg01no315_e08.g1 CHROMAT_FILE:
MSMg01no315_e08.g1 PHD_FILE: MSMg01no315_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:41 2005
(638 letters)
>mm_chr6_16521477_16522513
Length = 1037
Score = 876 bits (453), Expect = 0.0
Identities = 490/511 (95%), Gaps = 17/511 (3%)
Strand = Plus / Minus
Query: 1 cagttacctctccccttaccacatactgccttgtcaaactgttcacaaacatttttcaaa 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagttacctctcccctt-tcacatactgccttgtcaaactgttcacaaacatttttcaaa 436
Query: 61 gatcacgactggccatgaacaagactgctccgcagagagcctgatgcccaggctccccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatcacgactggccatgaacaagactgctccgcagagagcctgatgcccaggctccccac 376
Query: 121 tctagctgctgttatatcttgcacatcccttctttctctagaacatgtcactcatacatt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 375 tctagctgctgttatatcttgcacatcccttctttctctaggacatgtcactcatacatt 316
Query: 181 ccaggaaatgacaactgccctttagatctaaaactctacatctagtgtctctactacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccaggaaatgacaactgccctttagatctaaaactctacatctagtgtctctactacaga 256
Query: 241 tactttgcaaaagttcattttacttgcaatgtttttttttctaatctggcaaacatcatt 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tacgttgcaaaagttcattttacttgcaatgtttttttttctaatctggcaaacatcatt 196
Query: 301 cattcattcattcattcattcattcattcattcattcatccatccccccattctagctta 360
||||||||||||||||||||||| | ||||| ||| |||||||||||
Sbjct: 195 cattcattcattcattcattcat-c-----------catccttcc----attctagctta 152
Query: 361 tgtcatcaagtgctgtgttccccattatagaattaaaattttctgacctatttctctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgtcatcaagtgctgtgttccccattatagaattaaaattttctgacctatttctctttt 92
Query: 421 ccccgtacgacattactaatactacaggcatttatttgactttggcagtatacattttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ccccgtacgacattactaatactacaggcatttatttgactttggcagtatacattttca 32
Query: 481 tattctgttgggagtattttaaaaagaatgc 511
|||||||||||||||||||||||||||||||
Sbjct: 31 tattctgttgggagtattttaaaaagaatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
