Query= MSMg01no316_k13.b1 MSMg01no316_k13.b1 CHROMAT_FILE:
MSMg01no316_k13.b1 PHD_FILE: MSMg01no316_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:28 2005
(695 letters)
>mm_chr6_23423500_23424594
Length = 1095
Score = 886 bits (458), Expect = 0.0
Identities = 530/554 (95%), Gaps = 7/554 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaacagaggtcgaaaagggaaaaaaaatgtatgttagaagaaag-tttgacata 62
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct: 550 ggaattcaacagaggttgaaaa-ggaaaaaaaatgtatgttagaagaaagttttg-cata 493
Query: 63 cccaggttatgtctgcaataggaaacgttctaaagcttttgcttttagaagtcttcatgg 122
|||| |||||||||||||||| |||| |||||| || |||| |||| |||||||||||||
Sbjct: 492 ccca-gttatgtctgcaatagcaaacattctaatgcatttgtttttcgaagtcttcatgg 434
Query: 123 ttgtatatttggatctgctatcgtctacataaataatagctaatagccgtcagggtcaca 182
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgtatatttggctctgttatcgtctacataaataatagctaatagccgtcagggtcaca 374
Query: 183 ggaatactttctacttctctctagtgatcataccttccgtgcagctgaaggagaagctgg 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 373 ggaatactttctacttctctctagtggtcataccttccgtgcagctgaaggagaagctgg 314
Query: 243 tggtagagtttgatgtgtcttcagcgtggactgta-ttgaaacacctgttgaaaatcatt 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 313 tggtagagtttgatgtgtcttcagcgtggactgtatttgaaacacctgttgaaaatcatt 254
Query: 302 gaacgttttcgtacgtgaatgataag-ggggaactggtaaagcaaaattatttttttaaa 360
|||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 253 gaacgttttcatacgtgaatgataagtggggagctggtgaagcaaaattatttttttaaa 194
Query: 361 gatttgttttatgtatgtgagtacgctgtggctgtcttcagacataccagaagaagggca 420
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 193 gatttgttctatgtatgtgagtacactgtggctgtcttcagacataccagaag-agggca 135
Query: 421 tcagatctcattacacttggttgtgagccaccatgtggttgctgggatttgaactcagga 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 134 tcagatctcattacacttggttgtgagccaccatgtggttgctgggaattgaactcagga 75
Query: 481 cctctaaagagcagtcagtgctcttaaccgctgagccatctctccagcccatgaaattat 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 74 cctctaaagagcagtcagtgctcttaaccgctgagccatctctccagtccatgaaattat 15
Query: 541 ttaagatggatata 554
||||||||||||||
Sbjct: 14 ttaagatggatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_k13.g1 MSMg01no316_k13.g1 CHROMAT_FILE:
MSMg01no316_k13.g1 PHD_FILE: MSMg01no316_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:28 2005
(658 letters)
>mm_chr6_23254172_23255229
Length = 1058
Score = 1226 bits (634), Expect = 0.0
Identities = 652/658 (99%)
Strand = Plus / Plus
Query: 1 cagacttaatggccctctgtggaaaatgcctcatctcttacagctcaaatcttgagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacttaatggccctctgtggaaaatgcctcatctcttacagctcaaatcttgagagca 260
Query: 61 agtgtttgccaggtgatctcatttgccacgaggcgagacaactactatggttaccgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtttgccaggtgatctcatttgccacgaggcgagacaactactatggttaccgacaa 320
Query: 121 ccagaggcatcaaaggcacaacacctggtccttgctgtgtgcgtagtcactttgttcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaggcatcaaaggcacaacacctggtccttgctgtgtgcgtagtcactttgttcaca 380
Query: 181 caggcggacagtgctaagggtaaggcaaagtagaggcaaaccttctactgatggatgtag 240
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 caggcggacaatgctaagggtaaggcaaagtagaggcaaaccttctaccgatggatgtag 440
Query: 241 acgatgaggagtctagttgtacccctgctgctgtctgcatactgggttattttgctcctc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 acgatgaggagtctagttgtacccctgctgctgtctgcatactgggtaattttgctcctc 500
Query: 301 ttgcctcacggggaagatgaagtttctcactgacctgacaaggatggcactaagaactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcctcacggggaagatgaagtttctcactgacctgacaaggatggcactaagaactgt 560
Query: 361 gaagatcattaatatgaaaagattaaaattagaaaatattaaaaagaatatttttggttt 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagatcactaatatgaaaagattaaaattagaaaatattaaaaagaatatttttggttt 620
Query: 421 gtttttcaagacagggtctttctatgtagctctggatgctctggaactcattctgtagac 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gtttttcaagacagggtctttctatgtagctctggatgctctggaacgcattctgtagac 680
Query: 481 caggctggtcctcagactcacagacatctacctgcctcttcctcccacgtgctgggatta 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 caggctggtcctcagactcacagacatctacctgcctcttccccccacgtgctgggatta 740
Query: 541 aaggtgtgcaccattatgcctgatgaataggaagaattattgtgactggtgtgattaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggtgtgcaccattatgcctgatgaataggaagaattattgtgactggtgtgattaatt 800
Query: 601 aaattttagtcatgggttttctgaataactaaatatgttgagttaggtaggactgttt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaattttagtcatgggttttctgaataactaaatatgttgagttaggtaggactgttt 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
