Query= MSMg01no317_l11.b1 MSMg01no317_l11.b1 CHROMAT_FILE:
MSMg01no317_l11.b1 PHD_FILE: MSMg01no317_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:45 2005
(555 letters)
>mm_chr6_109421185_109422141
Length = 957
Score = 998 bits (516), Expect = 0.0
Identities = 541/550 (98%), Gaps = 2/550 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaagtaccctcaaagtcaaatggggtcccagcatataacgtagtttccacaga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagtactctcaaagtcaaatggggtcccagcatataacgtagtttccacaga 264
Query: 65 tgtttgccattgataccacaattaaatttctacacgtagataagagggaggttgagaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttgccattgataccacaattaaatttctacacgtagataagagggaggttgagaaaa 324
Query: 125 acttaggttcttttagattctttagaaaaataaatcaacacattagaaaggtaggctctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttaggttcttttagattctttagaaaaataaatcaacacattagaaaggtaggctctt 384
Query: 185 tagaaaaatcccagcatggcatccttttgaaaagaaaaaagaatcattctaagatttaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaaaatcccagcatggcatccttttgaaaagaaaaaagaatcattctaagatttaat 444
Query: 245 atgattaacctccaaggctttatttgctacttgatttttttt--ctttgttgggttaaaa 302
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 atgattaacctccaaggctttatttgctacttgattttttttttctttgttgggttaaaa 504
Query: 303 ataagaaataaaaatatcactctttaggtttatttctgcctgccaggtgcttaccctagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataagaaataaaaatatcactctttaggtttatttctgcctgccaggtgcttaccctagt 564
Query: 363 tgatgtcacacacctgaaaaatgagttgagtatctcttggtctcttgaaagcagcacaac 422
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatgtcacaaatctgaaaaatgagttgagtatctcttggtctcttgaaagcagcacaac 624
Query: 423 ctagtgacttgtggaagaactagctacatattttctctgtgcgtgcgtgcgtgtgtgtgc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagtgacttgtggaagaactagctacatattttctctgtgcgtgcgtgcgtgtgtgtgc 684
Query: 483 gtgtgtgtgtgtgtgcgtgcgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat 542
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 685 gtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 744
Query: 543 gtgtgtgtgt 552
|||| |||||
Sbjct: 745 gtgtatgtgt 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space: 516115
Effective search space used: 516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_l11.g1 MSMg01no317_l11.g1 CHROMAT_FILE:
MSMg01no317_l11.g1 PHD_FILE: MSMg01no317_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:45 2005
(312 letters)
>mm_chr6_109588197_109588908
Length = 712
Score = 526 bits (272), Expect = e-154
Identities = 302/312 (96%)
Strand = Plus / Minus
Query: 1 ataacacctcaagtgagaataataagtgtatttgaagagaacctctggtttgggaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ataacacctcaagtgagaataataagtgtatttgaagagaacctctggtttgggaaatgc 453
Query: 61 tttggaaataaaatcaagtaaacaatcttgtgaatgaatagtttaaaaagatgaaccaaa 120
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 452 tttggaaataaaatcaaggaaacagtcttgtgaatgaagagtttaaaaagatgaaccaaa 393
Query: 121 gaattcaaaactccttggaattttggcttatgtataagaaatgccatcttttttcaaatg 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 392 gaattcaaagctccttggaattttggtttatgtataagaaatgccatcttttttcaaatg 333
Query: 181 agaaaatttaggaaatatctaaagagggtaagaggtggacagaaagttataaataatcat 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaaaatttaagaaatatctaaagagggtaagaggtggacagaaagttataaataatcac 273
Query: 241 ggtctttattataattttaatccatagttaatccatacagctgtgtcccaggttgtaaaa 300
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 ggtctctattataatcttaatccatagttaatccatacagctgtgtcccagattgtaaaa 213
Query: 301 catggcaagggt 312
||||||||||||
Sbjct: 212 catggcaagggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
