Query= MSMg01no317_m06.b1 MSMg01no317_m06.b1 CHROMAT_FILE:
MSMg01no317_m06.b1 PHD_FILE: MSMg01no317_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
(652 letters)
>mm_chr6_45236845_45237896
Length = 1052
Score = 1181 bits (611), Expect = 0.0
Identities = 636/651 (97%), Gaps = 11/651 (1%)
Strand = Plus / Plus
Query: 1 tcacatctaactccaatttcaagacatccattgccctcttgtaggctcagtgggcaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacatctaactccaatttcaagacatccattgccctcttgtaggctcagtgggcaccag 260
Query: 61 atgcaccactatttgaacattcataaatatatgcaaacacacagccatacatttaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaccactatttgaacattcataaatatatgcaaacacacagccatacatttaaaata 320
Query: 121 aatcattttaaacataaagtttcttcacataaaagagtctacattttaaatttttattca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcattttaaacataaagtttcttcacataaaagagtctacattttaaatttttattcg 380
Query: 181 tgaaattttacacagtagaaaggaaaagaagatgcaaagtgcttttataaataaataaga 240
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgaaattttacacagtagaaa-----------tgcaaagtgcttttataaataaataaga 429
Query: 241 ggttctacgaaaatgactaaatgttgtgtcagaatgatgctcctgaagagcaagtaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggttctacgaaaatgactaaatgttgtgtcagaatgatgctcctgaagagcaagtaagag 489
Query: 301 caagctgactgaggctttaaatgtcttgaaggaaaggctctaacccacatcatcactgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caagctgactgaggctttaaatgtcttgaaggaaaggctctaacccacatcatcactgtg 549
Query: 361 agattagattaaaattgttttcagtagggtaggtagtgggtatacggactctctagtctg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agattagattaaaactgttttcagtagggtaggtagtgggtatacggactctctagtctg 609
Query: 421 ataactcatgctgctaaagaggttacaaagtaaaaaatgggtggtcactccctagggata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ataactcatgctgctaaagaggttacaaagtaaaaaatgggtggtcactccctagggata 669
Query: 481 gcaaatgcaacacaactgtttgaacagggtttccctttccttctttgtacgtttaattaa 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcaaatgcaacacaactgttcgaacagggtttccctttccttctttgtacgtttaattaa 729
Query: 541 atggtgctcgtgactattcaagtataatgaaaatatcattatctatgaatgtcaaataag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atggtgctcgtgactattcaagtataatgaaaatatcattatctatgaatgtcaaataag 789
Query: 601 caaaacgaattagcttaaaatgtctaaagacgcaagtggcaaacacagctt 651
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 790 caaaacgaattagcttaaaatgtctaaagatgcaagtggcaaacacagctt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_m06.g1 MSMg01no317_m06.g1 CHROMAT_FILE:
MSMg01no317_m06.g1 PHD_FILE: MSMg01no317_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
(638 letters)
>mm_chr6_45384959_45385996
Length = 1038
Score = 1141 bits (590), Expect = 0.0
Identities = 628/644 (97%), Gaps = 8/644 (1%)
Strand = Plus / Minus
Query: 1 agagtggctccctgcacaacacaagcttgcagctacgagggccatcgggactatctcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 agagtggctccctgcacaacacaagcttgcagctacgagggccatcgggactatctcata 922
Query: 61 gtcaatgagtgaagaaaagtcagaacatattattatcttgtcaaagggttcattttcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtcaatgagtgaagaaaagtcagaacatattattatcttgtcaaagggttcattttcaaa 862
Query: 121 atacacgtagccaatgtg------attattattattattctgtaaggagaagacacagat 174
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 861 atacatgtagccaatgtgattattattattattattattctgtaaggagaagacacagat 802
Query: 175 tcatggagcacatttaatcacaagtccaaagatatgtaatatc-tgataattaaaagtaa 233
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct: 801 tcatggagcacatttaatcaaaagtccaaagatatgtaatatcttg-taattaaaagtaa 743
Query: 234 atgaagaacatttcatcatcaggcctgatatttatgaacataacggcccagagaagagca 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtgaagaacatttcatcatcaggcctgatatttatgaacataacggcccagagaagagca 683
Query: 294 caaagtaaaactcattagatgatcttctcagggaaatgtttgctaaataaacaaatgaat 353
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 682 caaagtaaaactcattagatgatcttctcagggaaatgtttgttaaataaacaaatgaat 623
Query: 354 gagaagaaaatgtgaatccaaaaacctagtcagaaaggtgctgtaaaggatacagatgag 413
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gagaggaaaatgtgaatccaaaaacctagtcagaaaggtgctgtaaaggatacagatgag 563
Query: 414 gctttagagggctagaactaatgaagtgcctatagaattagtgatctagtgagagttaaa 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 gctttagagggctagaactaatgaagtgcctgtagaattagtgatctagtgagagttaaa 503
Query: 474 gttttgttatttagttgttcagtaagatgttgagaagatcatgagagagggccaagaagt 533
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 gttttgttatttagttgttcagtaagatgttgagaagatcgtgagagagggccaagaagt 443
Query: 534 agagggtacttattgttcttgtaggataccctggtttgattccacgcagtatgtgttggc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agagggtacttattgttcttgtaggataccctggtttgattccacgcagtatgtgttggc 383
Query: 594 ttataattatttataccaatggatctgaatgccttttctaacca 637
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 ttataattatttataccaatggatctgattgccttttctaacca 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
