BAC Information

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BAC

Clone NameMSMg01-317N08
Chromosome6 (Build37)
Map Location 46,378,257 - 46,378,567
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317N08.T7 (MSMg01no317_n08.b1)MSMg01-317N08.TJ (MSMg01no317_n08.g1)
ACCAG437794AG437795
length756754
length of high quality
(start - end)
319 (46 - 364)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no317_n08.b1 PHD_FILE: MSMg01no317_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:53 2005CHROMAT_FILE: MSMg01no317_n08.g1 PHD_FILE: MSMg01no317_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGATTTATCCTGATTGTGAGGAACTGAAATAGCTGAACGTGAG
AGGCAGGAGTTGCTGAGTGATTACAAAGGTTTATAACAAAGACAGCTTGT
GAGAGGTCGACAAAGAGGAGGAGACGTGGCTGAGGGAAGACAGAACAGAG
AACAGAGTGGATCCACGCTTAGGTTAACTATAGAGGAGGCAAACCAGGTT
AGGAGATAGAAAAGGAAATAAAGTGCCTTGGATAAAAACAGGAGAGAGTG
AGGGAAATAAAATGGAAGAATTTTGGATATGAGGCTTATATTCATCATCA
CACACACACACTCTTTTTTTTACCCACCCCCCCCCCCACANANACACACA
CACACACACACTCACAGCTTCCCCCCGCAGAAAGGGAAAGGAAAATGCGG
GAACATGAAGGGGTTAAGAGCTCAGGAAGCACCACACAGAACAGGTGAAC
TTTGTGTCCTGATTTCTAGCTATTTCCTTTCCATCAGGGAAAGGCAAGGA
CTACTGTTATAGTAAATCTAGACAATGTCAACACAACTCCATTTCATCTG
ATCACGCTTTCAAGCCAGCTGGTATCCAGCCCTGTTTAAGACAACTCACT
GAAAAATCAGCCAAATAGTGGGGATTATATTTAAATTATCTTAAGTGTTG
GGATAGCATCTTAAGAATTGCCAACACCAGAGACTCTGTGATGAGTAAGT
ACCGAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATTAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCTTGTGCATACCNNAGCAGACGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGCTCATAGAAAAATTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAACGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
ACACATATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCC
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_n08.b1 MSMg01no317_n08.b1 CHROMAT_FILE:
MSMg01no317_n08.b1 PHD_FILE: MSMg01no317_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:53 2005
         (319 letters)



>mm_chr6_46378053_46378770
          Length = 718

 Score =  557 bits (288), Expect = e-163
 Identities = 306/316 (96%), Gaps = 9/316 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagatttatcctgattgtgaggaactgaaatagctgaacgtgagaggcaggag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcaaagatttatactgattgtgaggaactgaaatagctgaacgtgagaggcaggag 456

                                                                       
Query: 65  ttgctgagtgattacaaaggtttataacaaagacagcttgtgagaggtcgacaaagagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgctgagtgattacaaaggtttataacaaagacagcttgtgagaggtcgacaaagagga 396

                                                                       
Query: 125 ggagacgtggctgagggaagacagaacagagaacagagtggatccacgcttaggttaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggagacgtggctgagggaagacagaacagagaacagagtggatccacgcttaggttaact 336

                                                                       
Query: 185 atagaggaggcaaaccaggttaggagatagaaaaggaaataaagtgccttggataaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atagaggaggcaaaccaggttaggagatagaaaaggaaataaagtgccttggataaaaac 276

                                                                       
Query: 245 aggagagagtgagggaaataaaatggaaga----attttggatatgaggcttatattcat 300
           ||||||||||||||||||||||||||||||    |    |||||||||||||||||||||
Sbjct: 275 aggagagagtgagggaaataaaatggaagaagcca----ggatatgaggcttatattcat 220

                           
Query: 301 catcacacacacacac 316
           || |||||||||||||
Sbjct: 219 ca-cacacacacacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)