BAC Information

Click to search

BAC

Clone NameMSMg01-317O06
Chromosome6 (Build37)
Map Location 34,050,506 - 34,050,738
singlet/doubletsinglet
Overlap geneLrguk
Upstream geneGm1401, Exoc4
Downstream geneSlc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317O06.T7 (MSMg01no317_o06.b1)MSMg01-317O06.TJ (MSMg01no317_o06.g1)
ACCAG437836AG437837
length718770
length of high quality
(start - end)
239 (123 - 361)233 (75 - 307)
definitionCHROMAT_FILE: MSMg01no317_o06.b1 PHD_FILE: MSMg01no317_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:57 2005CHROMAT_FILE: MSMg01no317_o06.g1 PHD_FILE: MSMg01no317_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTCTCATAGTGCTTCGTATACCCTTCTTTGATTTTAAGAA
ATTGTTTATTTCACGTGCTCCCATGAGTTTATGCAAGAGCCCACGGAGGC
CAGCCAAGGAGGGCATCAGATACCCTGGAATTTGAGCCATAGACAGTTGT
GAGCCACCATATGAGTGTTAGGAACTAACCCCAGATCCTCTGCAATGACA
GTAAGTGCTCTTAGCTGCTGAGCCATCTCACCAGACCTCCAAAATCTCCA
AAGTTTTACAAAGTTCTTTTTCCTTTCAACTGTCATACGCACACAGGTTT
GGGTATGTGTGTATAGGCGAAGATGCTCACAGAGGTCAGAGGTGTTGATA
TTCCTCCAGTACCCCCCCCCACAGGAGATATGAGTTGCTGTGAACTCAGA
TCCTCTGCAAGACCAGCATGCACTCCTACCTGCTGGGCCACCTCTCTGGC
CCCCTTTTAGGATTTTGAGACAATGGAAAGGTCAGCGGTTTAAAAAATGA
GTAAGGAAAAGGCATAAGTTTTCATAGTTATAGAGACTTTTTTTACCCCT
TCAATGAATAATAATTCCAATTATAACTATCCCACAGGACTATTGCGAGG
CTCAAATAAGATAATGTGCATATGAAAGCTCTTTGCTGGGAGGGAAGTAT
GATTTGGGTATTATGTGT
NACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTATTTCCTCCGCGGAATTCAGTGCCAGCGACAGCATTCCC
AGTGCCGTGTAACCATCACTGCCACCTGTTTTCAAAGTTTTTCATCATCT
GAAACATAATCTCTATATTCATTAAGCATTAATCCCCTTGCCGCGGTCAC
CTCTGATCCACTTCCTGTTCTCTGCCAGTTTACCTACTGGAGTTAGCCTC
ATCTTTTAATCCAACCTTGTTTCTTCACTAAAGTTGTGTTTTAGTTTTTA
TCTGTGATAAATTCAGTGATGATAATGATGAGCCGAGGGTATCATCAGGA
GCCCTAACGTAAAGGGAAGGCTTTTCCAGTCTTGCCCGTTTTGCCCCCTT
CCATTTCTCGGGGGGGCTTTTTTTCCCCCCACCCCGGTTAAAAAATAAAA
GGACCCCCGGTCTGTGGAAATAGTTTTTTTTTTTTGGGAAAACCCCCCAG
ATGGGGTTGATACAAAACACCCAATTTCTTTTTTTTATTATTGTGATGGT
TAAAAACCAAATTTCTGTTTCTCTGATTCCCTATTTATTTTTCCTCCTTT
TTTTTTATTCCCTATCAAAATTTTCTATCCTACCCTAGCTTTCCCCATAT
TATTCCTAACATCTTATCTCTCCTTCTATTTCTCTTATATTTCTACCTTT
CCACTTTCACCCTTTATTTTTACCCATTTCTATTATTCACCCACTCATCC
CTCTCTCCCACTTATATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_o06.g1 MSMg01no317_o06.g1 CHROMAT_FILE:
MSMg01no317_o06.g1 PHD_FILE: MSMg01no317_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:57 2005
         (233 letters)



>mm_chr6_34050306_34050938
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcagtgccagcgacagcattcccagtgccgtgtaaccatcactgccacctgttttca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagtgccagcgactgcattcccagtgccgtgtaaccatcactgccacctgttttca 260

                                                                       
Query: 61  aagtttttcatcatctgaaacataatctctatattcattaagcattaatccccttgccgc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aagtttttcatcatctgaaacataatctctatattcattaagcagtaatccccttgccgc 320

                                                                       
Query: 121 ggtcacctctgatccacttcctgttctctgccagtttacctactggagttagcctcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcacctctgatccacttcctgttctctgccagtttacctactggagttagcctcatct 380

                                                                
Query: 181 tttaatccaaccttgtttcttcactaaagttgtgttttagtttttatctgtga 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatccaaccttgtttcttcactaaagttgtgttttagtttttatctgtga 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)