BAC Information

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BAC

Clone NameMSMg01-318O21
Chromosome6 (Build37)
Map Location 19,482,193 - 19,482,877
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318O21.T7 (MSMg01no318_o21.b1)MSMg01-318O21.TJ (MSMg01no318_o21.g1)
ACCAG438590AG438591
length745860
length of high quality
(start - end)		708 (35 - 742)---
definitionCHROMAT_FILE: MSMg01no318_o21.b1 PHD_FILE: MSMg01no318_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:11 2005CHROMAT_FILE: MSMg01no318_o21.g1 PHD_FILE: MSMg01no318_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTATC
TTAACTAATGAAAATTTAAAACAAAGTTTGTCTTTCATTTGGTATATATA
TATATATATATTCATATATATTATTTCATAATGCTAACTTGAAAGTATGT
ACCTTCATTATCCATGGAATCTAAACAATTCTGAGTATAAAATTAAGACA
AAATGTGGTAAAACTCTAAAATTGACTAAGTTAAAATTGGAGAAGAACAC
AGACTGGAGCTAAGCATAGTTTGAAATGGATCAAGGAAGGCAAGATGGAC
TATTGTAACATTCAAAATAAATTACAAAAGCCACCATCAGTCTTGCATAG
GGCAATAACATTTTCATAGGAAACTTATTAAAATTCTTAAATTCAAACAG
GTTGCACCTCCCACACACAGGCATTTTTTAAAGGATTGTTATCTTAAAAG
GATCACAACTACTCATGAGATGATTGAGGCCAGGACTAATGAAAGAAAAA
AGAAAGAGAGAGAAGCTTCTGATATGAGAAATGTATGTAGCTCAGTCAAA
TTTCCTCTATCTTAAAAGAGTAAATATCTGAACAGAAGGAGGAGAGGTAA
CAAAATCACTCATCCCCAAAAGAGATGTANAAACTCACTGAGACAAAACT
GCTGTAAAGATCATACACAAAATCCTGAGAAAGTCAATAAGTTGCCTTAT
TTGCAGTTAANATACTCATTAAAGAAAGGACTACACCACTGAGAA

GGGATGCCTGGGGGCCGCCTGTTTCACAAAAAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTATGTCTAATTAAAAATCAATTGTATCTGTATTC
CTAAGGATGCGTTTTGCAAAAGTTAAACTTAACCTAGATTTTTGGAGAAA
AAGGCTGGCTGCTATTTAAATATACTGACAAAATGCCTTTATGATTTGTG
TGAGGGGAATAATGAAAAATATCAACCTGAACCATGTCTAGCTTCTTGTT
GTGAAATTATAAAAATAAGTAGTCCCAATTTTTCATTTACCTCCACTACC
CCTACTATTTCTTTGAATTCCATCTCACTGGACCCCCATCAAATTCCACT
TTGTACCATCCCCCCCTCCACGCATTCTTTGCCTACGATTCTATTCCTAT
GTCACTTTCCTATCACCCCCCTTTTCCGCCTTTGATCTCCACTTTTTCCT
CCTTCTCTCCGTTTCACCCTTTCTCTTATCTTTTCAACCCCTTTCCTCTC
TCTTGCCCTTCTTTCTATACGTATTCCCTTTTACATCACTCTTCCACCCT
CCCCCCCTTCACTTCCCTACTGTATCGATCAATATCCTTTCTCCCCCTCA
CTCCTACTCTTTCCCACTCTCTTCTTTTTCCTCTTTCCCTAACCGCTACT
CTTCCTCCCCCCTCTCCCTTCCCTGCAAACACCACTTCACTTTTCCGTCC
CAATGACGTCCTTCCACACTCCTTCCCCTCTGTTGGTAACGCCGTTATTA
CCTCCTCTCTTCATCCTCCCTTCCTTCCCCCCTATCTTCATATTTACCCT
CCCCTCCCCTCTCCCTTTATATCTTCCCTCCTCTCTTTTTCCCTCCTCCC
CCCCTAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_o21.b1 MSMg01no318_o21.b1 CHROMAT_FILE:
MSMg01no318_o21.b1 PHD_FILE: MSMg01no318_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:11 2005
         (708 letters)



>mm_chr6_19481906_19483014
          Length = 1109

 Score = 1208 bits (625), Expect = 0.0
 Identities = 675/705 (95%), Gaps = 21/705 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatcttaactaatgaaaatttaaaacaaagtttgtctttcatttggtatata 64
           ||||||||||||  |||||||||||||||||||||||||||||||||||||||||     
Sbjct: 972 gaattcactatcaaaactaatgaaaatttaaaacaaagtttgtctttcatttggt----- 918

                                                                       
Query: 65  tatatatatatattcatatatattatttcataatgctaacttgaaagtatgtaccttcat 124
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ---------------atatatattatttcataatgctaacttgaaagtatgtaccttcat 873

                                                                       
Query: 125 tatccatggaatctaaacaattctgagtataaaattaagacaaaatgtggtaaaactcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tatccatggaatctaaacaattctgagtataaaattaagacaaaatgtggtaaaactcta 813

                                                                       
Query: 185 aaattgactaagttaaaattggagaagaacacagactggagctaagcatagtttgaaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aaattgactaagttaaaattggagaagaacacagactggagctaagcatagtttgaaatg 753

                                                                       
Query: 245 gatcaaggaaggcaagatggactattgtaacattcaaaataaattacaaaagccaccatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gatcaaggaaggcaagatggactattgtaacattcaaaataaattacaaaagccaccatc 693

                                                                       
Query: 305 agtcttgcatagggcaataacattttcataggaaacttattaaaattcttaaattcaaac 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtcttgcatagggcaataactttttcataggaaacttattaaaattcttaaattcaaac 633

                                                                       
Query: 365 aggttgcacctcccacacacaggcattttttaaaggattgttatcttaaaaggatcacaa 424
           |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggttggagcttccacacacaggcattttttaaaggattgttatcttaaaaggatcacaa 573

                                                                       
Query: 425 ctactcatgagatgattgaggccaggactaatgaaag-aaaaaagaaagagagagaagct 483
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 572 ctacttatgagatgattgaggccaggactaatgaaagaaaaaaagaaagagagagaagct 513

                                                                       
Query: 484 tctgatatgagaaatgtatgtagctcagtcaaatttcctctatcttaaaagagtaaatat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctgatatgagaaatgtatgtagctcagtcaaatttcctctatcttaaaagagtaaatat 453

                                                                       
Query: 544 ctgaacagaaggaggagaggtaacaaaatcactcatccccaaaagagatgtanaaactca 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 452 ctgaacagaaggaggagaggtaacaaaatcactcatccccaaaagagatgtaaaaactca 393

                                                                       
Query: 604 ctgagacaaaactgctgtaaagatcatacacaaaatcctgagaaagtcaataagttgcct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgagacaaaactgctgtaaagatcatacacaaaatcctgagaaagtcaataagttgcct 333

                                                        
Query: 664 tatttgcagttaanatactcattaaagaaaggactacaccactga 708
           ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 332 tatttgcagttaaaatactcattaaagaaaggactacaccactga 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1109
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1099
Effective search space:   767102
Effective search space used:   767102
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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