BAC Information

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BAC

Clone NameMSMg01-319L10
Chromosome6 (Build37)
Map Location 20,290,392 - 20,443,107
singlet/doubletdoublet
Overlap geneLOC100040838
Upstream genenone
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L10.T7 (MSMg01no319_l10.b1)MSMg01-319L10.TJ (MSMg01no319_l10.g1)
ACCAG439153AG439154
length742723
length of high quality
(start - end)		372 (42 - 413)346 (70 - 415)
definitionCHROMAT_FILE: MSMg01no319_l10.b1 PHD_FILE: MSMg01no319_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:05 2005CHROMAT_FILE: MSMg01no319_l10.g1 PHD_FILE: MSMg01no319_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,290,392 - 20,290,757)(20,442,764 - 20,443,107)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATTGTGCTCTCTACCTTTAGAGTCCAATATTAGTGTTTTGCTTGTTTG
AGCAGTGATATTGAACAACACTTGCATAAATACTTCAAGGTCAAGTGTAT
TTTGGTTATATACTTCTCATTCCTCCCACCAACTGAATGTGTGGGTTTTT
TTGTTTGTTTGTTTTGTTTTATTATTTTAACCCCACTTAGTCCTGGTAGT
GCTGCCAGTATGTGACACAAGAACAGCCTTTTATCCAAATACATGTCAGA
CTTTTAGCTTCTTAATCTATTACATAACATTCAAATCCACATTCCTTCTC
ATTTTAGTTCAATTTTTAATTAATATAATAAATTTATTCTAAGAGTAACT
GTATTTAAAGACCCCCCCCTACTCTAAAGATAGGTTTGAAAACATTTGGT
ACACTTGTGGGGAACATAAAGAATTTAAAAATGACATGCAGTCTTTCTTT
TTTTTTTTTTTTAATCCTTGGTCCCATGGTTCAAATGATAAAACTTTTAA
AAATGTTTATCCTTTTAGTATTCTAGTTTGGATATATGAAAGGAGAAAAA
CACATCTACACTTAATTTTATTTTATTTTTATGGTAATGTTATTTTAATG
TCCCCTGCTGAAACCGGTGTAAAAATCTTAATTTGTTGGTATCATTACAC
TTTCATAAATACCCAATGCTCTGAGGGTTTCCTTTTAGCTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTTCTCTAAAGCACAGCATTACTGCTAAC
GACAGGCGAGGTCTGATAAAGGACACAAGTATAGGATGCAAGGGTCTTGG
TTCAGGGACAACTCTGAGTATTACCTCTGTGGCAATAGGGTAAGGTCTTT
CATGAGCACTATCAAAATCACCATCCATTTATCCATTTGAGGAGGTCAAT
GAGGCAGACGATTAATCTCTAACTAATTTTCAAAGTTATCTATGAGCTGT
GAAATATTTGTAAAACTACAACTAATTGATTTCTCAAATTTATCAGTTAC
ATTGTCACAATATTTAGAGCTAATTATTTATTTAAAATCTCTAATTTTTC
TAGTTTATATTTACCCCCACTAAATATCTAGAGCCAACAATTACTTCTAT
GTCCTCTAAAACAAACATGACATAAAGAAACTAGGTTAAGACATTTTTTT
TGTTTACATTTATGATAAAGTTAAATGTTAAGTGCATTGGTGAATAGATT
CAATGTTTCAGTGGTTAAAATCATGAAGTGGTCCTGCAGATGACCCAAGA
TCACTTTCCTGCACTCACATTTGATGACTCAGAATCTGCTTTCACTCCCA
TTGCAAGAGATTGAACACCTTTGCTATCTTTAGTCATGAACAAAGCACTT
CATCTGACATATACACACATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l10.b1 MSMg01no319_l10.b1 CHROMAT_FILE:
MSMg01no319_l10.b1 PHD_FILE: MSMg01no319_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:05 2005
         (372 letters)



>mm_chr6_20290188_20290959
          Length = 772

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattgtgctctctacctttagagtccaatattagtgttttgcttgtttgagcag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattgtgctctttacctttagagtccaatattagtgttttgcttgtttgagcag 264

                                                                       
Query: 65  tgatattgaacaacacttgcataaatacttcaaggtcaagtgtattttggttatatactt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatattgaacaacagttgcataaatacttcaaggtcaagtgtattttggttatatactt 324

                                                                       
Query: 125 ctcattcctcccaccaactgaatgtgtgggtttttttgtttgtttgttttgttttattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcattcctcccaccaactgaatgtgtgggtttttttgtttgtttgttttgttttattat 384

                                                                       
Query: 185 tttaaccccacttagtcctggtagtgctgccagtatgtgacacaagaacagccttttatc 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tttaaccccacttagtcctggtagtgctgccactatgtgacacaagaacagccttttatc 444

                                                                       
Query: 245 caaatacatgtcagacttttagcttcttaatctattacataacattcaaatccacattcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaatacatgtcagacttttagcttcttaatctattacataacattcaaatccacattcc 504

                                                                       
Query: 305 ttctcattttagttcaatttttaattaatataataaatttattctaagagtaactgtatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctcattttagttcaatttttaattaatataataaatttattctaagagtaactgtatt 564

                 
Query: 365 taaaga 370
           ||||||
Sbjct: 565 taaaga 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no319_l10.g1 MSMg01no319_l10.g1 CHROMAT_FILE:
MSMg01no319_l10.g1 PHD_FILE: MSMg01no319_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:06 2005
         (346 letters)



>mm_chr6_20442564_20443309
          Length = 746

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttctctaaagcacagcattactgctaacgacaggcgaggtctgataaaggacacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agtttctctaaagcacagcattactgctaacgacaggcgaggtctgataaaggacacaag 485

                                                                       
Query: 61  tataggatgcaagggtcttggttcagggacaactctgagtattacctctgtggcaatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tataggatgcaagggtcttggttcagggacaactctgagtattacctctgtggcaatagg 425

                                                                       
Query: 121 gtaaggtctttcatgagcactatcaaaatcaccatccatttatccatttgaggaggtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtaaggtctttcatgagcactatcaaaatcaccatccatttatccatttgaggaggtcaa 365

                                                                       
Query: 181 tgaggcagacgattaatctctaactaattttcaaagttatctatgagctgtgaaatattt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 364 tgaggcagacgattaatctctaactaattttcaaagttatttatgagctgtgaaatattt 305

                                                                       
Query: 241 gtaaaactacaactaattgatttctcaaatttatcagttacattgtcacaatatttagag 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtaaaactacaactaattgaattctcaaatttatcagttacattgtcacaatatttagag 245

                                                       
Query: 301 ctaattatttatttaaaatctctaatttttctagtttatattta 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctaattatttatttaaaatctctaatttttctagtttatattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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