BAC Information

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BAC

Clone NameMSMg01-319L21
Chromosome6 (Build37)
Map Location 32,619,939 - 32,620,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620104, 1700012A03Rik, Plxna4
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L21.T7 (MSMg01no319_l21.b1)MSMg01-319L21.TJ (MSMg01no319_l21.g1)
ACCAG439174AG439175
length824726
length of high quality
(start - end)
---198 (442 - 639)
definitionCHROMAT_FILE: MSMg01no319_l21.b1 PHD_FILE: MSMg01no319_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:07 2005CHROMAT_FILE: MSMg01no319_l21.g1 PHD_FILE: MSMg01no319_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTCGCGGAGAAAAACGANNCACANTGTTTCAAAAAAAGGGGNNNNNN
NNNNNGATTTTCCAAAAAAAGAGGGAAANNANNNGAAAAAAAGGGNAGAA
AANAAAAAAATAATTTTTTACCCAAAAAAAGGAGNAAAGAAAATAAATAT
GAAAAGAAAAAAAATGAGAAAAAAAAAAAATTTAATTGAAAGAAAATGAA
TGTTGAGTGATGTGTATTATATATAAAAAAATAAAAAAAAAGAAAAATGA
GAAAAGATTTTTTTTTTATAAATTTATAAATATTTTATAAGTTAGTTTAT
TGATTTAATAGAAAGAAAGAAGGAGGGAAATTTTAATAATTTATAAAAAA
AAGAAAAATAAAAAAAAAAAAATTTATTTTTTTTTTCCCCCCCCCCCCCC
CCCNATAAATATTTTTTGGTTTGAGATTGTAAGTCCCCCCCCCCTGTATT
AAAAAAAAAAAAAAAGGGGGGTGGTGGTGTTTTTATTTATTATTTGTATT
TTTTCTTTTTAAAGACNATTATTTTTTTTATATTTTTTTTTTTTAATGTA
ACAGGCATTTTTACTATTTTTTTTTCTTCCTTGTTTCTTTTATAAATAGT
TATATAGACCATTTTGATTATTTTTATATCTTTTTTTCATTTTCCGTTTT
TTCCTTTATACTGTTTTTTTATATTTTATTCCCCTAATAATTTTATTAAC
CAACATCACACTATCCTCTTTTTTATTTTTTTATTTGTGTTTTTTATTAT
TCATTTTTAATATTTTATTTCTTACGCGTTATATGCTAGGATAATTTAAT
TTGAATATGTGGTGGATTTTTTTG
CAGTGAGAGGCCTGGNGGNCGCCGGGCCTTTCCGCACCGCNGAACNANAG
AAGGATTTACANNCACGGGAGGGANANAGGAANNGGAAGNANAGCCNCGG
GCNANAAAGGANNGGGCACCNCANACANNGAACGGGGAGCCGGGGCANCA
CAGACAGAGGGNNGGGCANAGNCCCGGGAGNACCCNCNNNGGNAAGCAAG
CNNCACACAGACAGAAGGNCAGAGCNCAAAGGCCCAGGAANNGGNGACTT
TTTACACTGGTTCCACAATCTTTCCACCGGATTCCGAAGAATGAGAGAAA
GATTTTCCTTAAGCATATTTTTTTTTATAGAGAACNNGCANAACCAGGNN
NCCAGAANNGTTTTTTTTATCCCCCCCCCCCGACACAGAGATGGAATTTC
AGGTTCACTGGGAAAACACACACTTACAGACAAGAGTCAACTGGCTCCAT
ACAAAAGGATGAAGAGAAACTGGGAAGTACGGGACATGTAAAAATTCCAG
GTTCACTGAGGACTAAGCTGTGGTGGGCAAAGTTAGAAACACTGGGAGAA
ACCATGGAGGTATGGGACGGTAAACTATGCCAAGAAGTTTGGTGGGTAGA
GCGGGTCTAAGTCCCCAGAAACTCGGGGTGCACATCTGAGATGGTAGGCG
GCTCCCTGCTTTTTGTTTTTTTCCTGGCCGGNAATGTATGGCACACTTCC
CACATAAGAAATTGTGACCTGTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l21.g1 MSMg01no319_l21.g1 CHROMAT_FILE:
MSMg01no319_l21.g1 PHD_FILE: MSMg01no319_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:07 2005
         (198 letters)



>mm_chr6_32619739_32620337
          Length = 599

 Score =  362 bits (187), Expect = e-104
 Identities = 196/199 (98%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctccatacaaaaggatgaagagaaactgggaagtacgggacatgtaaaaattccagg 60
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tggctgcatacaaaaggatgaagagaaactgggaagtatgggacatgtaaaaattccagg 260

                                                                       
Query: 61  ttcactgaggactaagctgtggtgggcaaagttagaaaca-ctgggagaaaccatggagg 119
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttcactgaggactaagctgtggtgggcaaagttagaaacatctgggagaaaccatggagg 320

                                                                       
Query: 120 tatgggacggtaaactatgccaagaagtttggtgggtagagcgggtctaagtccccagaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgggacggtaaactatgccaagaagtttggtgggtagagcgggtctaagtccccagaa 380

                              
Query: 180 actcggggtgcacatctga 198
           |||||||||||||||||||
Sbjct: 381 actcggggtgcacatctga 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 599
Length adjustment: 8
Effective length of query: 190
Effective length of database: 591
Effective search space:   112290
Effective search space used:   112290
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)