BAC Information

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BAC

Clone NameMSMg01-320L18
Chromosome6 (Build37)
Map Location 56,314,195 - 56,500,826
singlet/doubletdoublet
Overlap genenone
Upstream geneGhrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L18.T7 (MSMg01no320_l18.b1)MSMg01-320L18.TJ (MSMg01no320_l18.g1)
ACCAG439893AG439894
length789799
length of high quality
(start - end)
239 (135 - 373)228 (186 - 413)
definitionCHROMAT_FILE: MSMg01no320_l18.b1 PHD_FILE: MSMg01no320_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:18 2005CHROMAT_FILE: MSMg01no320_l18.g1 PHD_FILE: MSMg01no320_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,500,601 - 56,500,826)(56,314,195 - 56,314,419)
sequence
ACCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAGATTCCATATATTTATTACTCACATTACTTTTTCAGTATA
AAATGATTCTCTGGGTTTTCACCCTAAAATGGGATTTACCATTTTATTTC
TATAATAGACTCATTACTAAGCAAAACCAAATAGGCTCATTACCAAAACA
TTAAAATTTCCCCAATTTTATCAAACATCCTTTCTTTTGTACACCCAGTT
CCAATGGGTGTCTACATGTTGACACAAACATTCCCCATCTGGCATGGATT
ATCTGTGTACACTGCTGTGTGATCAACATGTTTCCCACTGAAATGTGATG
GTCCTTCCTTTTTTTTTTCCCCCCTCCCCCCCTTCCTTACTTACTTCCTT
ACTTATTTCCTTTACTTCCTTCAAAAAAAAAAAAATTCCTGGGGGGGGGG
CTTCTTTTTTTTTCCGTCCACTTGTTTCCCAGTATATCGGTCCTTACCTA
CATCCCTTGTTACTACCCCGCTTTCTTCTTGTATAATTATATAAAATAAA
GAATCTTGCCCCTGTTTTGTACCTAATCCTCTCTAGCTCTTCTCCTACAT
ATTCTGCTTTTATCGTTAACTATTTTTTTCTTCTGCCCACCTTCATTTTA
CCTAACATCCTCCTTTTATTCCATCATTTCTTCCACATTTGCCGCTTTTC
TCCCCATACTTTTCCCTACTCCATTCTATCACTCCGTAATACATACGTCT
TATTTATATCCTTGCTTCTATTATATCATTTCCCTTCCT
ATTTTTTTTTTTTTTTTTTCTTTTTTTTCCATCTCGCGGTTTTTTTTTAA
TCTAACTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGTATTCCTTAACTTCA
AACCATGAAGATGAAGCCATTTTTCCCTCTGGGATCAAAGAGTCCTAACT
TCTCAGGGATTCTGTTCACTCGGCCTCTCATCTCTCAGCTCCTGACCTGA
CATACCAGTTCTGTGAGAAATGAAGCCAGAGTACCATAAAGGAGCTTAGG
CATCCTTTCTTCCTTCTAATCAAGAGTTCTCTAATCCACAGTCAGAAATC
TGTTTCACTTGACAAGTTCATGCTTTCTGTTGCTCTGTTCTTTTCCCTTT
AGCTGATGCATATTCAGTAAGTTACCAANACGNAGCCATGTTGTGAATCA
CAATTTCTGGTGACATTCTCTTTGGAAAAAAAAAAATAAACAGATACGGA
CTGACTCAGAAGCAAGCTTTGGAAGCCATAATGCTGCTCACAACTGTATA
TTGGAGGTTAATTTCTGGTGTTAATTACTAAGTCAGTTTTTTAAAGTTGA
ATTCTATAAAAGTCTCATGTATGTAAATACTTTAAAATACACATACGCAG
GCATATAAATATATATATATATACATATATCAATATATATATATATCATA
CACATACTTGTATACCAATTTATAAATGTGTTTACAGGCACACTTTTTAA
TGGGCTTTCCCCAGTATTTTTTTGTATTACAATAGCCTAAATACTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l18.b1 MSMg01no320_l18.b1 CHROMAT_FILE:
MSMg01no320_l18.b1 PHD_FILE: MSMg01no320_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:18 2005
         (239 letters)



>mm_chr6_56500401_56501039
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccattttatttctataatagactcattactaagcaaaaccaaataggctcattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttaccattttatttctataatagactcattactaagcaaaaccaaataggctcattacc 367

                                                                       
Query: 61  aaaacattaaaatttccccaattttatcaaacatcctttcttttgtacacccagttccaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 366 aaaacattaaaatttccccaattttagcaaacatcctttcttttgtacacccagttccaa 307

                                                                       
Query: 121 tgggtgtctacatgttgacacaaacattccccatctggcatggattatctgtgtacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgggtgtctacatgttgacacaaacattccccatctggcatggattatctgtgtacactg 247

                                                         
Query: 181 ctgtgtgatcaacatgtttcccactgaaatgtgatggtccttcctt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctgtgtgatcaacatgtttcccactgaaatgtgatggtccttcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_l18.g1 MSMg01no320_l18.g1 CHROMAT_FILE:
MSMg01no320_l18.g1 PHD_FILE: MSMg01no320_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:19 2005
         (228 letters)



>mm_chr6_56313995_56314622
          Length = 628

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagagtcctaacttctcagggattctgttcactcggcctctcatctctcagctcctga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caaagagtcctaacttctcagggattctgttcactcggcctctcatctctcagctcttga 260

                                                                       
Query: 61  cctgacataccagttctgtgagaaatgaagccagagtaccataaaggagcttaggcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgacataccagttctgtgagaaatgaagccagagtaccataaaggagcttaggcatcc 320

                                                                       
Query: 121 tttcttccttctaatcaagagttctctaatccacagtcagaaatctgtttcacttgacaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tttcttccttctaatcaagagttctctaacccacagtcagaaatctgtttcacttgacaa 380

                                                        
Query: 181 gttcatgctttctgttgctctgttcttttccctttagctgatgca 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcatgctttctgttgctctgttcttttccctttagctgatgca 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)