BAC Information

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BAC

Clone NameMSMg01-320L23
Chromosome6 (Build37)
Map Location 20,617,991 - 20,618,250
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L23.T7 (MSMg01no320_l23.b1)MSMg01-320L23.TJ (MSMg01no320_l23.g1)
ACCAG439903AG439904
length731710
length of high quality
(start - end)
315 (46 - 360)260 (77 - 336)
definitionCHROMAT_FILE: MSMg01no320_l23.b1 PHD_FILE: MSMg01no320_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005CHROMAT_FILE: MSMg01no320_l23.g1 PHD_FILE: MSMg01no320_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGATTCACATTTTTCAGGTCGGTGGGTGGCACCATCCCTCAGCT
GGGGAGCTTGCCTAACCAATAGACATGGTCTCTGCTGGTAATACCTCCCC
TTTGTTGGGTATTGTGGCTAAAGTTCTCCCCATTGGGTCCTGTGAACTTC
TTAGGTCCCTGGCATCTGGGACTTTCTAGTGGCTACCCCTCACTGCTACA
TAGCTACTTTCAAATTCCTGATTGTCTGTACTTCTCTACTATCTCCTCTC
ATATCTGAACTGTTCTCCCTTTTCCCTCCCTCTCCTCTTTTCCTCAGATT
CCTCTCTCACTCTTTCTCCACACCCCCCCCTCTTTGGTGTAATCTTTCTT
CTTGGGCTTCATATGGTCTGTGAGATGAAAAGAGAGTAGTTCGAACTTCT
TTTTGACTAATATCCACTTATCAGTGAGTACATGCCTTGTGTGTTCTTTT
TTGACTGGGTTACCTCATTCAGAATGATATTTTCAAGTTCCATCCATTTA
CCTGTGAATTTCATGANATCGTTGTTTTCTTTAATCTTTCTTCTGGTGAT
TTTTANATGTTTTACTTTAATAGTAATGTCTTTACTTTGAATATTGATCT
AAATGCTACTAATAGTGGACATTTTTATTCTTTATAATGATATATAATTG
TATAATGATATATAATGATTGATATACTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAAATTTGAGAACTAATTC
AAATATTTAAATGGATGTTTTAAGTGGTCAGAGCATTCAAATCTCTAGTT
GAGTTAGCTGAATTTACTACAAAATCATTTATGGAAATAAAGTAGTACAC
AGATCAATAGTTTCTCAAGGGGAAAATACATCCTTCTTGAAATAATATAA
ATACCTAATGGGATTTTCTATATGAAAAATTTTCGTCATCTAGATTACAG
TTGATTTGGTCTCTTTGTTCTGCAGATCCAAAAGATGTATTGGAAGAATT
GTCACATCCTAACCTTGTTTTTTATTTTTGCCCCCCCCCCCCCCCCACAA
AAAATTGGGCCCCCCATACCATATTAATTTTATAAAAGGGGGGACCACCG
GGGGGAAACATATAAAAAAAAATAAAGACGGCGTTTTCTCTTCTTGGTCG
TCGCGCGGGGGGGCGTTTTCCCCTCAAAATAAAACAACTTTTTCCCCCCC
TTTTCTCCTTTCCTTTTTTTCCTACCCTCCCGTAATTTTACTTTGTCGCC
TCTGCTTCATTCCCCCCCTCTCGTGATTTATCTTTCCTTTTCCTTTTTTC
TCCTTTTATTAATTCTTTTAACTAATATGCCTCCCCTGCCCTTCCTTACT
ACTCCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l23.g1 MSMg01no320_l23.g1 CHROMAT_FILE:
MSMg01no320_l23.g1 PHD_FILE: MSMg01no320_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:20 2005
         (260 letters)



>mm_chr6_20617791_20618450
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagaaatttgagaactaattcaaatatttaaatggatgttttaagtggtcagagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 caggagaaatttgagaactaattcaaatatttaaatggatgttttaagtggtcagagcat 401

                                                                       
Query: 61  tcaaatctctagttgagttagctgaatttactacaaaatcatttatggaaataaagtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcaaatctctagttgagttagctgaatttactacaaaatcatttatggaaataaagtagt 341

                                                                       
Query: 121 acacagatcaatagtttctcaaggggaaaatacatccttcttgaaataatataaatacct 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 340 acacagatcaatagtttctcaagaggaaaatacatccttcttgaaataatataaatacct 281

                                                                       
Query: 181 aatgggattttctatatgaaaaattttcgtcatctagattacagttgatttggtctcttt 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatgggattttctatacgaaaaattttcgtcatctagattacagttgatttggtctcttt 221

                               
Query: 241 gttctgcagatccaaaagat 260
           ||||||||||||||||||||
Sbjct: 220 gttctgcagatccaaaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)