BAC Information

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BAC

Clone NameMSMg01-321B08
Chromosome6 (Build37)
Map Location 52,820,639 - 52,820,877
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321B08.T7 (MSMg01no321_b08.b1)MSMg01-321B08.TJ (MSMg01no321_b08.g1)
ACCAG440148AG440149
length783762
length of high quality
(start - end)
244 (75 - 318)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no321_b08.b1 PHD_FILE: MSMg01no321_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:45 2005CHROMAT_FILE: MSMg01no321_b08.g1 PHD_FILE: MSMg01no321_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCAGGAAGTGTTCCCTGACCTCGTTTTCATGTGAATTACAAAGG
GTGTGTTTCATTGATAACTGGTTTGTTTGTTTGTTAGTTTTTACTTTTTT
TCTGTTTTTTCACAGATCTGACAGAAACTAATGTTGAATAAAAAGACTAA
TATGTATTTTATGTACGTATGCTACACTATACAAACTTATTGTACAGACT
CTTTACTGTGGGTTAGTTAAAATCAACTAGGAGACAACAGATAATCAAGT
CCAGTACTTGGAGGGTGATCTGTTCTCTCTTCTATGCAAAGCTGTCTCCC
CATCCCACCCCATCCTATCTTATATTCACCGTCATACCTTTGATTGTTCA
TTGAAGACACCTTTGTTGTTTTTCCCCCCCCCCCCACAATAATGTAACTT
CTTTTATCTATCTGACAGTGTACCTTGTGCCATTATTTGATTTACTATGT
CCCTTCCGTTTTATTATTTCGATTCTCCCACTGATGCTCTTCCTTGCATT
ACTCCATTCTCCACCTATTCCCCATTCTTATATAGTTTTTTGTTTCTCTC
TTTTTAGTTTCCAACTTCTGCTTTTTTATTTTCTTTCTTGCTTTATTTTT
CGTCTTTCTTTATTTGCTCTTTTTCTTTCCCTTTTTTCTCCTCTGGTATC
TTCTTTTTCCTCCTCTTTTTCTTATCACTTTTATTATTTCTATATCCCGA
CTCCCACACTAACTTTATTTTACTAATTCTTTT
CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAGCCTGGGAAATTTGCAGA
GAGCCTGTCTCAAAGTAATCTGGCCCTGGTGGTGCATGCTTGCAGTCCCA
GCACCTTGGATAGAGAGGCAGGAAAATCATGAGATCAAGGCCAACTTGAG
CCATCCCAGACTTCCCTGTAAGATCCTGTCTCAGAAACATGAATTAATTA
GCCAGATCTACTGGCTGGTTTTGGGTGTCAACTTGACACAGGCTGGAGTT
ATCACAGAGAAAGGAGCTTCATTCGTTGAAGTGCCTCCATGAGATCCATC
TGTGGGGTATTTTCTCTTTGAGTGATCCCCCCCCCCGCGTGGTGTAGGCG
CCATTGTAAGTGGTACCACCCCCCCCATTACAACATGAGTTCTATAAGAG
AGCAGGCTGTAGTTAGCCTTTGGTAAGCTAGCCATAATGAAATTTCCCTC
CTTGTCCCCTGTTTCATCTCCTGCTTCCTGATCTGTTTGATTTACTGTCC
TGAATTACTTGTTGATGAACAGCACCTTGCTATCTGTAATTTCTATGAAT
CTTTTTTCCTAGCCAAATTGCTATCTTGTGATATGATGGTCAGGTCTTTT
ATTATTATATCTTCTATTTCATAATTCTCCATATTTCGACCCTTTCTTCA
ATCTTTCATATCTCATCCCCATCTAATATATATTTTCTAATCATGTCTTC
CTTACCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_b08.b1 MSMg01no321_b08.b1 CHROMAT_FILE:
MSMg01no321_b08.b1 PHD_FILE: MSMg01no321_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:45 2005
         (244 letters)



>mm_chr6_52820439_52821077
          Length = 639

 Score =  406 bits (210), Expect = e-118
 Identities = 234/244 (95%), Gaps = 5/244 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcgttttcatgtgaattacaaagggtgtgtttcattgataactggtttgtttgtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 439 cctcgttttcatgtgaattacaaagggtgtgtttcattgataactggtttgtttgttt-- 382

                                                                       
Query: 61  tagtttttactttttttctgttttttcacagatctgacagaaactaatgttgaataaaaa 120
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --gtttttac-ttttttctgttttttcacagatctgacagaaactaatgttgaataaaaa 325

                                                                       
Query: 121 gactaatatgtattttatgtacgtatgctacactatacaaacttattgtacagactcttt 180
           ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||
Sbjct: 324 gactaatatgtattttatgtacgtaggctagactatacaaacttattgtccagactcttt 265

                                                                       
Query: 181 actgtgggttagttaaaatcaactaggagacaacagataatcaagtccagtacttggagg 240
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 264 actgtgggttagttaaaatcaactaggagacaacagagaatcaagtacagtacttggagg 205

               
Query: 241 gtga 244
           ||||
Sbjct: 204 gtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 639
Length adjustment: 9
Effective length of query: 235
Effective length of database: 630
Effective search space:   148050
Effective search space used:   148050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)