BAC Information

Click to search

BAC

Clone NameMSMg01-321L08
Chromosome6 (Build37)
Map Location 36,279,363 - 36,279,517
singlet/doubletsinglet
Overlap gene9330158H04Rik
Upstream gene1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321L08.T7 (MSMg01no321_l08.b1)MSMg01-321L08.TJ (MSMg01no321_l08.g1)
ACCAG440607AG440608
length783804
length of high quality
(start - end)
161 (71 - 231)155 (154 - 308)
definitionCHROMAT_FILE: MSMg01no321_l08.b1 PHD_FILE: MSMg01no321_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:31 2005CHROMAT_FILE: MSMg01no321_l08.g1 PHD_FILE: MSMg01no321_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTCTGTTTTTCCCTATACCTTATTTTTAATTGGATTATTTGGTTAT
TCTGTTCTAGTTTCTTGAGTTCTTTATATATTTTATGAACTAACCCTCTG
TGAGATGTGGAGTTGGTAACAATATTTTCCCATTCTTTGGGCTGCTGTTA
TGTCTCTATTTACTGTGTCCTTTGCCTTACAGAAACTGCTCATATATATG
AGGTCCCATTTACTGATGTTCTTAACGCTTCCAAGATAGGTGTTCTGTTC
ATGAAGTTTTCTCTGGTGCCTTTTTGTTACTGGCTACCCCCTACTTTCTC
TTCTATTATCTTCATTGTGCCTGCCTTTCATCTCGAGCTCTTTGATCCTC
ATTGACTTAATTATGACCCCCCCCCCCTCCGTATTGATTCATTTGCGTTC
TTCTACATTGCCTACCTCTATACTGATCTCTCCTATGTGTTTTATAGCTC
ACCTCCAGTCTGATCACCAGTATGTGCTTAATATGTTCTTATGTCCTATT
CTCTTTTTCTGATTTTCTCTTTCTTTAGCCTTTTTTTTATGCTTCGTTTG
TTTTTGTTTTTCTAGTTTTTTCTTCTTGTTTCCCTTTTGTTTCTGCTGTT
TCTTCTTTTTTTTGCTTTCGACTCCGTAATTTTTCTTTTCGTTCTCTTTT
TTTTCTCGCCTTTCTCTACTTTACCCCATATCTTATTAATTCACTTCATA
CTCCCCCTCCTTCCCCTTTATTCTTTTCTTATA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAACCCTCAGGAAAACA
GAAATGTGTGCTGTACATTGAACATTTCTATAAATTGGGAAAAGAAAATG
GGACAGAAACCCGTAATAGCTGCCTTATCTTTGCCAAAGTGAGAGAGACA
TTTGAAATACTTCACCTGTATGAACTTAAAAAGTAGTGGTCAAATGACAA
GAAAAAGGGAAAAGGGAACAAGAGACTGGTATGTGTTCAGAAAATATTAG
GCTCAAAATCTAGCCTCTGGTATTGATTACAACCTGTTTGGAAGTTAGTC
AAACTAGCTTAGAGTGAAAGATTGACTCTGAGTTTGACCAGATAAAAATA
AAGTTAATTAACAAAAGATCCCCCCCCCGCATGAGAGAAATATTTATAGG
TGTGTGTGTGTGTGTGTCGTGAGTGTGTGTGTTCTCCCATGCCCAATCCT
CCTCTTCGTTTTCATTATATTCCTTTTTTTTACCCAGCATGCCTTGTTGT
CGACATTCTTTAATCTTCCGTTTATTGTTATCTATTCCCGCCTCATCGTA
TTCTCTCTTTTCTTTAACTTATTTATGTCCACTAATATAGCATCTCTTAT
TTCATTTATTATTTTTATTCTTATTTTGTCTTTAATCTTTCATTCCCTAT
CCCTCATATTTCCCTTTTTTCCCCGCCTCCCTTCCTTCCTCCCGTTACTT
CTTCTTCGCTTTTCTCTTTCTTTCTATCCTTTCTCCCCTTCCCAATCTCA
TTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_l08.g1 MSMg01no321_l08.g1 CHROMAT_FILE:
MSMg01no321_l08.g1 PHD_FILE: MSMg01no321_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:31 2005
         (155 letters)



>mm_chr6_36279163_36279717
          Length = 555

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaacccgtaatagctgccttatctttgccaaagtgagagagacatttgaaatacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagaaacccgtaatagctgccttatctttgccaaagtgagagagacatttgaaatacttc 296

                                                                       
Query: 61  acctgtatgaacttaaaaagtagtggtcaaatgacaagaaaaagggaaaagggaacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 295 acctgtatgaacttaaaaagtagtggtcaaatgacaagaaaaagggaaaagggaaaaaga 236

                                              
Query: 121 gactggtatgtgttcagaaaatattaggctcaaaa 155
           |||  ||||||||||||||||||||||||||||||
Sbjct: 235 gacacgtatgtgttcagaaaatattaggctcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)