BAC Information

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BAC

Clone NameMSMg01-322B08
Chromosome6 (Build37)
Map Location 106,001,523 - 106,001,812
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B08.T7 (MSMg01no322_b08.b1)MSMg01-322B08.TJ (MSMg01no322_b08.g1)
ACCAG440878AG440879
length738741
length of high quality
(start - end)
293 (71 - 363)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no322_b08.b1 PHD_FILE: MSMg01no322_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:58 2005CHROMAT_FILE: MSMg01no322_b08.g1 PHD_FILE: MSMg01no322_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCAGGTTCTCCGAAATTCATATTGGTGAAGAAAAATATCAGGTGT
ATAAGCTAAGTACAGAAAAGGCCACAATATGATGATGTAACAGATGAGAG
ACCTGGGTGTCTTAGTCTACCACAAGCTCAGTTCTCACTTCTTTGTTAAT
GCACCTGCTAAATGAGGTAAAATGGAGCTGTGGACAAAAACATGAGGAGG
CACATACACACTATCAGAACACAGCTGGGGCATTCCTCCAGTGATAGTCA
CAACTCCTCTCTTCTGAATGAGTTGATAAGAAAGAAATTATGTAATTGTT
TACAGAACAAAAATTTATACTTACTTGCATACTGCAACTGTATTGTATAT
CTTTCTGACTATAGAGACCACTGTCATAACATTCCTGGAAATGATGCTTG
CCATTTGTTGTTTTTGTTCTATCATAGGATTTTTTCAATTAAGAAATAAT
AAACATTTTTTAATTAGGTATTTTATGAAATTCCTAGACAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACCTAATCACAAAAGAACTCAC
CTGATATGTACTCCATGATAAATGAATATTAGCCCATATGTTTAGAATAC
CCAAGGTACCAGATACTATTTTGCCAAACACATGCAAATCAAGAATAACG
AAGACCATAATGTGGACACTTTTCCCCTTCTTAGATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCATATACTGGATATAGTACTACCGGAGGATCC
AGCAATACATCTCTTGTTTATATATCCACAACATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTANAAAGAATGAAT
TTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACTTTCACAAAGGAACTCACACAATATGTACTCACTGATAAT
TGGATATTAGCCCAAAACCTAAAATACCCCAGATATAAGATATTATTTCC
TAAACACATGACACTCACAGAATAATGAATGACTGATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b08.b1 MSMg01no322_b08.b1 CHROMAT_FILE:
MSMg01no322_b08.b1 PHD_FILE: MSMg01no322_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:58 2005
         (293 letters)



>mm_chr6_106001211_106001903
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 284/293 (96%), Gaps = 3/293 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatattggtgaagaaaaatatcaggtgtataagctaagtacagaaaaggccacaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 602 ttcatattggtgaagaaaaatatcaggtgtataagctaagtacagaaaagg-gacaatat 544

                                                                       
Query: 61  gatgatgtaacagatgagagacctgggtgtcttagtctaccacaagctcagttctcactt 120
           | |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||
Sbjct: 543 ggtgatgtaacagatgagagacctgggtgtc--agtctaccataagctcagttctcactt 486

                                                                       
Query: 121 ctttgttaatgcacctgctaaatgaggtaaaatggagctgtggacaaaaacatgaggagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 ctttgttaatgcacctgctaaatgaggtaaaatggagctgtggacaaaaacacgaggagg 426

                                                                       
Query: 181 cacatacacactatcagaacacagctggggcattcctccagtgatagtcacaactcctct 240
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 425 cacatacgcactatcagaacacagctgggacattcctccagtgatagtcacaactcctct 366

                                                                
Query: 241 cttctgaatgagttgataagaaagaaattatgtaattgtttacagaacaaaaa 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttctgaatgagttgataagaaagaaattatgtaattgtttacagaacaaaaa 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)