Query= MSMg01no322_c11.b1 MSMg01no322_c11.b1 CHROMAT_FILE:
MSMg01no322_c11.b1 PHD_FILE: MSMg01no322_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:03 2005
(510 letters)
>mm_chr6_88138137_88139047
Length = 911
Score = 909 bits (470), Expect = 0.0
Identities = 497/506 (98%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccccatcttgctctcctagagagggtcctgggtagcagtgggacctgtggccc 64
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 710 gaattcaccccatcttgctctcctagagctggtcctgggtagcagtgggacctgtggccc 651
Query: 65 gagtggtacttgaaccacaggaaacctcattatttaggttaattagacagagcagcccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gagtggtacttgaaccacaggaaacctcattatttaggttaattagacagagcagcccca 591
Query: 125 gccttggtggtccattgctgactgtggagctgggacggcacactgccaaaaggagtttag 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 590 gccttggtggtccattgctgactgtggagctgggacggcatactgccaaaaggagtttag 531
Query: 185 caggctccattctggggcttggggcttgggagtagctctggccaggagtgctgggagtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 caggctccattctggggcttggggcttgggagtagctctggccaggagtgctgggagtta 471
Query: 245 ccttaagttctagcagtttcctcagcactgtcctgtaagaggagctgagtgggggctccc 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 470 ccttaagttctagcagtttcctcagcactgtcctggaagaggagctgagtgggggctccc 411
Query: 305 ccatccacagaccttcccctcccacatggtcatccacagaccaagcctcctagcttggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccatccacagaccttcccctcccacatggtcatccacagaccaagcctcctagcttggca 351
Query: 365 gctttataccacccgctttcccactcggagcctctggttctgcctctgcacttctccttc 424
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gctttatacaagttgctttcccactcggagcctctggttctgcctctgcacttctccttc 291
Query: 425 caggatccaggatcgtggactgtggggcttgtgtgtgagcttgcctttaaacagca-ttt 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 290 caggatccaggatcgtggactgtggggcttgtgtgtgagcttgcctttaaacagcatttt 231
Query: 484 tgtaagcctgacttgacaattggcag 509
||||||||||||||||||||||||||
Sbjct: 230 tgtaagcctgacttgacaattggcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_c11.g1 MSMg01no322_c11.g1 CHROMAT_FILE:
MSMg01no322_c11.g1 PHD_FILE: MSMg01no322_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:03 2005
(663 letters)
>mm_chr6_87983010_87984072
Length = 1063
Score = 1241 bits (642), Expect = 0.0
Identities = 657/662 (99%)
Strand = Plus / Plus
Query: 1 tttctgtacaactagatctctaaataaaaccattgttcaggcattacagcacaagccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgtacaactagatctctaaataaaaccattgttcaggcattacagcacaagccttg 260
Query: 61 ggaggcagatgcaggaggatttatgtgagtttggggccagcctagtctacaaagtgagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggcagatgcaggaggatttatgtgagtttggggccagcctagtctacaaagtgagtt 320
Query: 121 ctagaatatccaggactacacagagaccctgtgtcacaaaagaataacaacaaaattact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagaatatccaggactacacagagaccctgtgtcacaaaagaataacaacaaaattact 380
Query: 181 gtttgttcacaaaggtggagctgaagttgtggctcaatggtagatggttgtctaccctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgttcacaaaggtggagctgaagttgtggctcaatggtagatggttgtctaccctgc 440
Query: 241 acagagcctttggttcagcagccccaaactacaaaataatacaaaaagccactagtaata 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagccacgggttcagcagccccaaactacaaaataatacaaaaagccactagtaata 500
Query: 301 tactaaagtcaccgaaatcttaactttgagtatggcatgtaatatctttatactattttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactaaagtcaccgaaatcttaactttgagtatggcatgtaatatctttatactattttc 560
Query: 361 ttttgctgatggcacttccttattaatttttaatttatgtacttaagttatttagtccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ttttgctgatggcacttccttattaatttttaatttatgtacttaagttatttcgtccct 620
Query: 421 ccccaggcctttctacagcacagtgctcagcaccatgcatgctgaggctgcctgcccgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccaggcctttctacagcacagtgctcagcaccatgcatgctgaggctgcctgcccgct 680
Query: 481 gactatactttcacttcccctgaatcccaaggatagaactcagtgttctctacagcagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gactatactttcacttcccctgaatcccaaggatagaactcagtgttctctacagcagca 740
Query: 541 aggagaaagaaacagaaaagccaactcactgctcagtttctaaccagcactgtttgaaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggagaaagaaacagaaaagccaactcactgctcagtttctaaccagcactgtttgaaca 800
Query: 601 ggtgaaattactaattaactatacatgccatctacccatcacacacacacacacacacac 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 ggtgaaattactaattaactatacatgccatctacccatcacacacacacacacactcac 860
Query: 661 ac 662
||
Sbjct: 861 ac 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
