BAC Information

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BAC

Clone NameMSMg01-322I03
Chromosome6 (Build37)
Map Location 126,269,192 - 126,269,846
singlet/doubletsinglet
Overlap genenone
Upstream geneScnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I03.T7 (MSMg01no322_i03.b1)MSMg01-322I03.TJ (MSMg01no322_i03.g1)
ACCAG441186AG441187
length730732
length of high quality
(start - end)
472 (38 - 509)655 (74 - 728)
definitionCHROMAT_FILE: MSMg01no322_i03.b1 PHD_FILE: MSMg01no322_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005CHROMAT_FILE: MSMg01no322_i03.g1 PHD_FILE: MSMg01no322_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTATCCCTGTACCCCATTTTTAATGGGGTTATTTGAATTTCTTGAGTCC
AGCTTCTTGAGCTCTTTGTATATATATTGGATATTAGTCTTCTATCAGAT
TTAGGATTGGTAAAAATCCTTTCCCAATCTGTTAGTGGCCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTTAGG
AATTTTTCCCCTGTGCTCATATCTTCACTCACAGCCATCTTTAAGATGGA
ACACAGTGCCCCCAATGAAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAG
GGGCCTGCCACCCTATAGGTGGAACAACAATATGAACTAACCGGTACCCC
CACAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGC
CATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAG
TACAGGGGAGTGCCAGGGTCAAGAAGTGGTATCGGGCGGGTAGGGAAGCA
TTTTTGTCCTATTTTTTCTCTTTTTTTTCCCTCGCCTTCTCTTTTTTCAC
CTCTCAATTTTCCATTTTTTTGTTCTCGACCCCTTATTTTTCCTTTTCTT
ATTTCCCTTTTTCCCCACTTTTTTCTTCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGAAGCCTGCATCTACTTGCAGCA
CCCTCAAAGAAAGATGGAAACAGAAACAATAGACCTAGCCTGAACTTTTG
CACAGTAGGAAGAACGACAGAGTTTAACTGGGATGCTGTCTCACGCTGAG
AAGGTCTCCTGCCCTCTTTCCTCCTGAGAGAAGGAGTCTCTCACAAAGGA
CTCCATCCTTTTGCCATCATAAATGATGTCTTTATCTACACATGTTTAGC
CACATTCATGATGATTCTAAAATACATGTGACCTGTGGACTGAAGGTTGG
ACACTATTGCATGTGGGAAAGGAGTCTGGATAAGTCACATGACCTACTTT
TTTACTTTCTCCATGACACCAAGAGGCAGGTCACTCTTTCCTGCTTTTCT
TGGTTTATTCTCTACTTCCTGCTTTGACTTACTCCACATACTGTGCTCAT
CTCCACACTATTATGGCAAACCCTCATCTCTCTCTCTCTCAAGACTTGTG
TTTGTGCCTGTACTGACCACATCTCACTTGAAGATCTCATGGGAACCTGG
AATTCTTATGTACAAAACTGACTTGGTTGTCTTTCTTGCAAAGTATATTC
TTGCAAATCTTGGTTCACTCCTTGTCAGTTCCCAATTACCCCAAGAGAGA
CCCAGGGAGAATTTCTTAGACTCCTCTCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i03.g1 MSMg01no322_i03.g1 CHROMAT_FILE:
MSMg01no322_i03.g1 PHD_FILE: MSMg01no322_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
         (655 letters)



>mm_chr6_126268992_126270046
          Length = 1055

 Score = 1189 bits (615), Expect = 0.0
 Identities = 645/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggaagcctgcatctacttgcagcaccctcaaagaaagatggaaacagaaacaataga 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 201 tttggaagcctgcatctacttgcagcaccctcaaagaatgatggaaacagagacaataga 260

                                                                       
Query: 61  cctagcctgaacttttgcacagtaggaagaacgacagagtttaactgggatgctgtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagcctgaacttttgcacagtaggaagaacgacagagtttaactgggatgctgtctca 320

                                                                       
Query: 121 cgctgagaaggtctcctgccctctttcctcctgagagaaggagtctctcacaaaggactc 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cgctgaaaaggtctcctgccctctttcctcctgagagaaggagtctctcacaaaggacgc 380

                                                                       
Query: 181 catccttttgccatcataaatgatgtctttatctacacatgtttagccacattcatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccttttgccatcataaatgatgtctttatctacacatgtttagccacattcatgatg 440

                                                                       
Query: 241 attctaaaatacatgtgacctgtggactgaaggttggacactattgcatgtgggaaagga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 attctaaaatacatgtgacctgtggactgcaggttggacactattgcatgtgggaaagga 500

                                                                       
Query: 301 gtctggataagtcacatgacctacttttttactttctccatgacaccaagaggcaggtca 360
           |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gtctggataattcacatgatctacttttttactttctccatgagaccaagaggcaggtca 560

                                                                       
Query: 361 ctctttcctgcttttcttggtttattctctacttcctgctttgacttactccacatactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctttcctgcttttcttggtttattctctacttcctgctttgacttactccacatactg 620

                                                                       
Query: 421 tgctcatctccacactattatggcaaaccctcatctctctctctctcaagacttgtgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctcatctccacactattatggcaaaccctcatctctctctctctcaagacttgtgttt 680

                                                                       
Query: 481 gtgcctgtactgaccacatctcacttgaagatctcatgggaacctggaattcttatgtac 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gtgcctgtactgaccacatctcacttgaaggtctcatgggaacctggaattcttatgtac 740

                                                                       
Query: 541 aaaactgacttggttgtctttcttgcaaagtatattcttgcaaatcttggttcactcctt 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaactgacttggttgtctttcttgtaaagtatattcttgcaaatcttggttcactcctt 800

                                                                  
Query: 601 gtcagttcccaattaccccaagagagacccagggagaatttcttagactcctctc 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcagttcccaattaccccaagagagacccagggagaatttcttagactcctctc 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)