Query= MSMg01no322_m23.b1 MSMg01no322_m23.b1 CHROMAT_FILE:
MSMg01no322_m23.b1 PHD_FILE: MSMg01no322_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:51 2005
(568 letters)
>mm_chr6_125205493_125206459
Length = 967
Score = 843 bits (436), Expect = 0.0
Identities = 522/566 (92%), Gaps = 26/566 (4%)
Strand = Plus / Plus
Query: 3 aattcaaccccagtgtcacacagatggctggtgtgggggcaggggcacgtgcgcacgtgt 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aattcaaccccagtgacagacagatggctggtgtgggggcaggggcacgtgcgcacgtgt 262
Query: 63 gtgcctgtgcactctgaggagtactccagcccaggtggaagaacaggggcttccttagtt 122
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 gtgcctgtgcactctgaggagtactccagcccaggtggaagaacagggccttccttagtt 322
Query: 123 ttcatgggaggggagaaggttccatgtcccatggttggtgactcacccatagctcacagc 182
||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 ttcttgggatgggagaaggttccatgtcccatggttggtgactcacccatggctcacagc 382
Query: 183 tataaacaggctggctctgattcctgggcagccaggggaaagagagagagctttgtattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tataaacaggctggctctgattcctgggcagccaggggaaagagagagagctttgtattt 442
Query: 243 gagaaaggcatttatgaaagtaggaaaaaggagatccatttagttaatgtgtgcccacca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagaaaggcatttatgaaagtaggaaaaaggagatccatttagttaatgtgtgcccacca 502
Query: 303 gatttggcgtgtcacaggtagcccccgacagcttggcaactgtcaacctgaggctagtat 362
|||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct: 503 gatttggcgtgttacaggtaacccccgacagcttggtgactgtcaacctggggctagtat 562
Query: 363 gcagaacccgctacccgccagctgggaaacacatgggcaagacctgagcaagtgtctggt 422
|||||| |||||| | ||||||||||||||||||||||||||||| | |||||||||
Sbjct: 563 gcagaagccgctatgtgggagctgggaaacacatgggcaagacctgagta-gtgtctggt 621
Query: 423 ctgagttctaacatacaagaacagtgcttctgtctcatttttttttcactcttccttggg 482
|||||||||||||||||||||||||||||| ||||||
Sbjct: 622 ctgagttctaacatacaagaacagtgcttc------------------------cttggg 657
Query: 483 tgtgggaagtctaatgaaaatatagaaatttaatagtcagctgtaaatttgggactgaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgtgggaagtctaatgaaaatatagaaatttaatagtcagctgtaaatttgggactgaaa 717
Query: 543 agaaccaaaacccaaaactggttagc 568
|||||||||||||||| |||||||||
Sbjct: 718 agaaccaaaacccaaa-ctggttagc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_m23.g1 MSMg01no322_m23.g1 CHROMAT_FILE:
MSMg01no322_m23.g1 PHD_FILE: MSMg01no322_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:51 2005
(648 letters)
>mm_chr6_125373405_125374452
Length = 1048
Score = 988 bits (511), Expect = 0.0
Identities = 526/531 (99%)
Strand = Plus / Minus
Query: 1 aaaacaggattccactgctcccaaggacatgcaaaagagagagaggcaaagtttcctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaaacaggattccactgctcccaaggacatgcaaaagagagagaggcaaagtttcctcag 472
Query: 61 gaggagctggggcacagcatttgactagcggaggctcacaaactctttgactggcaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 471 gaggagctggggcacagcatttgactagcggaggctcacaaactctttgactgtcaatct 412
Query: 121 acaaaggtccagtaaccgagtgcccctaacagctggaaatcttgctggcatgattcatca 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaaaggtccagtaaccaagtgcccctaacagctggaaatcttgctggcatgattcatca 352
Query: 181 atgaacggcccacatattttgggtctgtggtcgtgaataagtcacggctgtggcacttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgaacggcccacatattttgggtctgtggtcgtgaataagtcacggctgtggcacttac 292
Query: 241 tgggcacaaacatgctcacctcgtccccgtccccaggaggcagcggagaaagggcaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgggcacaaacatgctcacctcgtccccgtccccaggaggcagcggagaaagggcaaatg 232
Query: 301 caggctcgtgcaggccttgtgcagcgaccctttgctctcagcacttgcaccaccagcgaa 360
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 231 caggctcgtgcaggccttgtgcagcgaccctttgctctcagcacttggaccagcagcgaa 172
Query: 361 tctctgctttaacgccggctccttggacaaaggccaagagcagcccctgtggatgtgtag 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 171 tctctgctttaacgccggctccttggacaaaggccgagagcagcccctgtggatgtgtag 112
Query: 421 aaacgtgaatgttcagaaggcagcatgtccatttagcaaaagcagaaacatccctctaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaacgtgaatgttcagaaggcagcatgtccatttagcaaaagcagaaacatccctctaag 52
Query: 481 aggtttgtgtcttccattctctgcctactctcccttgggttaccacactaa 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 aggtttgtgtcttccattctctgcctactctcccttgggttaccacactaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
