BAC Information

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BAC

Clone NameMSMg01-322N01
Chromosome6 (Build37)
Map Location 19,080,859 - 19,081,329
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322N01.T7 (MSMg01no322_n01.b1)MSMg01-322N01.TJ (MSMg01no322_n01.g1)
ACCAG441408
length737739
length of high quality
(start - end)
---590 (76 - 665)
definitionCHROMAT_FILE: MSMg01no322_n01.b1 PHD_FILE: MSMg01no322_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:51 2005CHROMAT_FILE: MSMg01no322_n01.g1 PHD_FILE: MSMg01no322_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGGGATTGCAACCTTATAGGAAG
AACAACAGTATCAACTGGACCCCTCAGGACTCCCAGAGACTAAGCCACAA
ACCAAAGAGCATACATGGGCTGGCCCTTGGCTCCTGGTTCATATATAGCA
GAGGATTGCCTTGTCTGGACTAAGTGGGAGAAGATGAACGTAATCCTGTA
GAAACTTGATACCCCAGGGAAGGGGGAAGCTAGAAGGGCTGAGGCAGTTG
TGGATGGGTGAGTGGGTAGGAAGCACTCTCTAGGAAACAAAGGGAAGGGG
GAACAAGAATAAGGGAGCAACATTTGTAATGTAAATAAGTAAAATAATTT
AATAAAAATAAATTAAAATCAACAAAGGAAAAAAGTCCATGCCACCATGG
CTGGGTCTGATGGTCACTTCTTTAGCAGCATAGCTTCAATCCATTTTAAT
ATTGCCTCCTCATCGTTAAGAGCTCTTGACATTTATGTTACCTATATCTT
GAAAGGGTGTCTACTAAACATTTTTGTTAGGGATATGAAGCCAATTCTTA
ACTCTATGGTGTTGATGGACTCAAAACAAAAAACAAAAACAAAAACAAAA
ACACTAATTGCTGAATAAACCAGGTACTCTAGTCACTGAAGTAAGAGGTG
GCACTCACCAACAGTTTTCAATCTGTGGGTCGTGGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_n01.g1 MSMg01no322_n01.g1 CHROMAT_FILE:
MSMg01no322_n01.g1 PHD_FILE: MSMg01no322_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:51 2005
         (590 letters)



>mm_chr6_19080340_19081329
          Length = 990

 Score =  859 bits (444), Expect = 0.0
 Identities = 465/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 95  ctggcccttggctcctggttcatatatagcagaggattgccttgtctggactaagtggga 154
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ctggcccttggctcctggttcgtatatagcagaggattgccttgtctggactaagtggga 931

                                                                       
Query: 155 gaagatgaacgtaatcctgtagaaacttgataccccagggaagggggaagctagaagggc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gaagatgaacgtaatcctgtagaaacttgataccccagggaagggggaagctagaagggc 871

                                                                       
Query: 215 tgaggcagttgtggatgggtgagtgggtaggaagcactctctaggaaacaaagggaaggg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgaggcagttgtggatgggtgagtgggtaggaagcactctctaggaaacaaagggaaggg 811

                                                                       
Query: 275 ggaacaagaataagggagcaacatttgtaatgtaaataagtaaaataatttaataaaaat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggaacaagaataagggagcaacatttgtaatgtaaataagtaaaataatttaataaaaat 751

                                                                       
Query: 335 aaattaaaatcaacaaaggaaaaaagtccatgccaccatggctgggtctgatggtcactt 394
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaattaaaattaaaaaaggaaaaaagtccatgccaccatggctgggtctgatggtcactt 691

                                                                       
Query: 395 ctttagcagcatagcttcaatccattttaatattgcctcctcatcgttaagagctcttga 454
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 690 ctttagcagcatagcttcaatccattttaatattgcctcctcatcgttaagatctcttga 631

                                                                       
Query: 455 catttatgttacctatatcttgaaagggtgtctactaaacatttttgttagggatatgaa 514
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 630 catttatgttacctatatcttgaaagggtgtctactaaacatttttgttaaggatatgaa 571

                                                               
Query: 515 gccaattcttaactctatggtgttgatggactcaaaacaaaaaacaaaaaca 566
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 570 gccaattcttaactctatggtgttgatggactcaaaaaaaaaaa-aaaaaca 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)