BAC Information

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BAC

Clone NameMSMg01-323E21
Chromosome6 (Build37)
Map Location 80,728,942 - 80,729,081
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043392, Lrrtm4, LOC100043390
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E21.T7 (MSMg01no323_e21.b1)MSMg01-323E21.TJ (MSMg01no323_e21.g1)
ACCAG441764AG441765
length1,1561,182
length of high quality
(start - end)
570 (123 - 692)473 (86 - 558)
definitionCHROMAT_FILE: MSMg01no323_e21.b1 PHD_FILE: MSMg01no323_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:42 2005CHROMAT_FILE: MSMg01no323_e21.g1 PHD_FILE: MSMg01no323_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGCCCTATGGNNNAACATTGCGCGCTATCGACTCCTATGGGAGAGGAT
CCGCGGAATTCACACAAATACTCTGCCTTCTAAAGCTGTGTACATGCACT
CCCTAGTGCTGAGCCGTTTGAGAGAGCTGTGTACATGCACTCCCTAGTGC
TGAGTTGTGTGTGAGAGCTGTGTACATGCACTCCTTAGTGCTGAGGCATC
TTTCAGTTCTTAATTTTTTTTAAGCTTATTCTCTGCTAACCTCAGATAAA
GGAAGTATCAAACACTTTAGAATAAAAAGTTTTTGCGATAGATATAGATA
TATGAGAGAGAGAGAGAGTGAGTGAGAGGGTAAGAGAGAGAAAGAGAGAG
AGAATGAGCTTCAGTGTGTGACTATGTGCACATGAACGAAACACCTGTTT
TCTTCAAGAGTAGAAAGCACTGTGATCACTGAACCATACCCTATTGCACT
GTGAAAGGCAGTCTGGGTTCTGGTTGAGTGAGGCTTACTGGAACGACCCA
GTAGAAAAATCTACAAGGGACCAAACTGTAAACTATGCTTCCAGACACAA
GCGCCTGACACCACATCAACTACTCAACTCCATACTCGTGTGACTATCAG
TCACATAGACAATGTCCAAGCTCCTGGTGTTCTGCTCCAGCCAGGTAAGC
TTCTCCCCACAGTTACTTGGCAAGTAACTTGGCAAGGTAGCCCAGCCCAC
TATAAAAGTGGCTGCTCGGCCCCTCCTCTCTCTCTCTTAAGCTCTTGCTC
ACTTCTTGTCTCTTATCTCTAGCTTTCCTTCTCCCCCTCCCTTATCCTCT
CTCTCCACATGGGCATGGCCAGCCTCTCCTCTACATTCTCTTTTTCTGGT
TTTTCACAAAAAAGGTCTTAAAATATGGAGCATTTCTTGTCCTTTGAGAA
TTTTTTTTACTGAAGCCCAAAAATAAAGGTTTCCTCTTTTTAGACTTTTT
CCTAAATTTTTTTGTATCTTGAAAAACTGGGTTGAGGTTTCTAAAACCCC
AGGTGGGCCAGGGACCCCAAAAAGAATTTTTTTTTGGTTTCTAAAAAAAT
AGGGGGGCCGAAAAATAAAAATAAAAAAAGNCTTTTTCCCTTCTCCTTCT
AAAGTTTCTCTGTCCAACNCTCTGCTCCTGTTTTCTTGGAGATTTCAACA
AAATTA
NCCCCCTTTTNNNNACCTCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATACACCTATGCAGTGAC
CTATGTTCCTATTTGCCTCTGACATTGCCTAACTAACTCCATATTCTCAC
GCATAATACTCCTTTCAATGTCCTGTATTTTTTCTGACGATGCACTAAAT
CCAGTTAATGCTTCTCACTCAGTCATGGGTGTAGAGCCATCCACTGGAGC
GTGTGAAAAATCTACCAGTGGCTACATCCCCAAAGAGAACTATTCTCCCT
CCTACAGCAGCTATCAACTGCCACTAGTCCCCTTAAAAAGGCATGAGGCA
TGAAGATTTCCCCTATCTATACAGGGGGTGGGGGTGGGGGGTGACTGTAT
TGATCTTGTCNGGTTCTATGCNGCTNAAAGCCTATAAATGAACTATTTCC
ACAGTTGTGTCGTGTCCAGAAGGCAGCATTTCATAAGACTACTTTCATTC
TACAGCTCTTATGTTCTTTCTGCCTACTCTTCAGGGACTTTCCTCTGTGC
TTGATGGNGTTTGNAAGAGTAATAACGACTCCCTTCCCCAGAGAGAGAGT
GTAGTGTAGGAATTCAGCCTTCCCAGACAAATCACACATGGAAAAGACTT
GTTGGTAAATAGAGTACTACATTCTGCATCAAGCTTATTGCAACCTTAAT
ACACAGGCTTTTCTCAAAATGTATTGGAGGGAAAAAAAAATCTATTTTCT
ATTTTTTTATTATAATATTATAACACTTGTACAGCCCCCGGTCTCTTTGA
TTTCTTCCTTCCGAACATAAAATACGTTAAACCTAGCCAATTGCATTCTA
AATTTTGCAAAACCTCAACCCCTTTTATAAAACCTCTTCTTGAGCTAATC
TTGCTTAACTATTATAACATTTCGTCCTAAAAAACCATCCTGAATAATTT
TCTAACCATTAAAAACCCTTGTCTTTTTTTGAATCTCCCCTAAAGGACTA
AAAAACGGACATAATACTTTCTTCTTTTTCATAATATTAATCAAAATTTT
TCCTTATAAATCATACTTTTCAAATAAATACAACATTTTATCATCTTTTC
TTTTTAAAATAACTTATTCTCTTCTATTCCAACCACTAAGTGTCTTTTTA
TGCTCTTAATATATATTACCTACCCTTCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e21.b1 MSMg01no323_e21.b1 CHROMAT_FILE:
MSMg01no323_e21.b1 PHD_FILE: MSMg01no323_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:42 2005
         (570 letters)



>mm_chr6_80728742_80729715
          Length = 974

 Score =  197 bits (102), Expect = 1e-54
 Identities = 129/140 (92%), Gaps = 4/140 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagctgtgtacatgcactccctagtgctgagttgtgtgtgagagctgtgtacatgcact 60
           |||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 340 agaggtgtgtacatgcactccttagtgctgagctgtgtgtgagagctgtgtacatgcact 281

                                                                       
Query: 61  ccttagtgctgaggcatctttcagttcttaat----tttttttaagcttattctctgcta 116
           ||||||||||||| ||||||||||||||||||    ||||||| ||||||||||||| ||
Sbjct: 280 ccttagtgctgagccatctttcagttcttaatggttttttttttagcttattctctgtta 221

                               
Query: 117 acctcagataaaggaagtat 136
           ||||||||| ||||||||||
Sbjct: 220 acctcagatgaaggaagtat 201



 Score = 85.8 bits (44), Expect = 8e-21
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                           
Query: 26  tgctgagttgtgtgtgagagctgtgtacatgcactccttagtgctgag 73
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgctgagctgtgtgtgagagctgtgtacatgcactccttagtgctgag 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 570
Length of database: 974
Length adjustment: 10
Effective length of query: 560
Effective length of database: 964
Effective search space:   539840
Effective search space used:   539840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)