Query= MSMg01no323_k20.b1 MSMg01no323_k20.b1 CHROMAT_FILE:
MSMg01no323_k20.b1 PHD_FILE: MSMg01no323_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:30 2005
(595 letters)
>mm_chr6_82293513_82294507
Length = 995
Score = 1077 bits (557), Expect = 0.0
Identities = 585/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 atcccttccaaactgactagacacagttttccttcaaactcgagtgcccatattctatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccttccaaactgactagacacagttttccttcaaactcgagtgcccatattctatcc 260
Query: 61 atgcagtctcttggcttatgtggtgccctgctgagctttcttttttttttccatttttat 120
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 261 atgcagtctcttggcttatgtggtgccctgctgagctttc--tttttttcccatttttat 318
Query: 121 taggtatttagctcatttacatttccaatgctataccaaaagtcgcccatacccacccac 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 319 taggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccatccac 378
Query: 181 ccccactcccctacccacccactccccctttttggccctggtgttcccctgtactggggc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccccaatcccctacccacccactccccctttttggccctggtgttcccctgtactggggc 438
Query: 241 atataaagtttgcaagtccaatgggcctctttttccagtgatggcctactaggccatctt 300
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct: 439 atataaagtttgcaagtccaatgggcctctctttgcagtgatggccgactaggccatctt 498
Query: 301 ttgatacatatgcagctagagtcaagagctccgggctactggttagttcataatgttgtt 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 ttgatacatatgcagctagagtcaagagctccggggtactggttagttcataatgttgtt 558
Query: 361 ccacctatagggttgcagatccctttagctccttgggtactttctctagctcctccattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccacctatagggttgcagatccctttagctccttgggtactttctctagctcctccattg 618
Query: 421 ggagccctgtgatccatccattagctgactgtgagcatccacttctgtgtttgctaggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggagccctgtgatccatccattagctgactgtgagcatccacttctgtgtttgctaggcc 678
Query: 481 ccggcatagtctcacaagagacagctacatctgggtcctttcaataaaatcttgctagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccggcatagtctcacaagagacagctacatctgggtcctttcaataaaatcttgctagta 738
Query: 541 tatgcaatggtgtcagcgtttggatgctgattatggggtggatccctggatatga 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tatgcaatggtgtcagcgtttggatgctgattatggggtggatccctggatatga 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_k20.g1 MSMg01no323_k20.g1 CHROMAT_FILE:
MSMg01no323_k20.g1 PHD_FILE: MSMg01no323_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:30 2005
(611 letters)
>mm_chr6_82441214_82442224
Length = 1011
Score = 1143 bits (591), Expect = 0.0
Identities = 606/611 (99%)
Strand = Plus / Minus
Query: 1 cacggaggttaaggcctcatgctctatatccatggatactgaagtttagatcccagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 cacggaggttaaggcctcatgctctatatccatggatactgaagtttagatcccagcacc 881
Query: 61 tatgcaacaagttgggtgtctccacaaatgcctgtaactctaggtcccaggggattgggt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 880 tatgcaacaagttgggtgtctccacaaatgcctgtaactctaggtcccaggggactgggt 821
Query: 121 ggaggatgattgctggggtggcttccatcctgaccaagttatgagctctgggttcaggag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 820 ggaggatgattgctggggtggcttccatcctggccaagttatgagctctgggttcagaag 761
Query: 181 agaccccgcctcagtggactaactcaggtcctcctgtttctacaggaggcacccagtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 agaccccgcctcagtggactaactcaggtcctcctgtttctacaggaggcacccagtgac 701
Query: 241 tcggagctcagtgactgggctctctcccatggcccttctcagtgattatttacaagtatt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 700 tcggagctcagtgactgggctctctcccatggcccctctcagtgattatttacaagtatt 641
Query: 301 gcctgaactactttttctggtctatccttagactatctgacttatgacacacaatgttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcctgaactactttttctggtctatccttagactatctgacttatgacacacaatgttaa 581
Query: 361 aaactcataaggaatgtcagatagaattttcaaaagttaggaacccatctagcactgttc 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 580 aaactcataaggaatgtcagatagagttttcaaaagttaggaacccatctagcactgttc 521
Query: 421 tcagaaggattttcattattgacatgcctgtagtgcatattggatggccaaatacgtgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcagaaggattttcattattgacatgcctgtagtgcatattggatggccaaatacgtgtc 461
Query: 481 agcggcttaccaaatgagaaaaaaatgacatgttgtaagttcttccaacatcaggagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcggcttaccaaatgagaaaaaaatgacatgttgtaagttcttccaacatcaggagttt 401
Query: 541 tatccttgaggctagaaagatgattcagtggttaagagtctttactgttcttccagatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatccttgaggctagaaagatgattcagtggttaagagtctttactgttcttccagatga 341
Query: 601 cctgagtttgg 611
|||||||||||
Sbjct: 340 cctgagtttgg 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
