BAC Information

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BAC

Clone NameMSMg01-324C05
Chromosome6 (Build37)
Map Location 91,353,214 - 91,353,489
singlet/doubletsinglet
Overlap geneWnt7a
Upstream geneZxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716
Downstream geneLOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324C05.T7 (MSMg01no324_c05.b1)MSMg01-324C05.TJ (MSMg01no324_c05.g1)
ACCAG442370AG442371
length806725
length of high quality
(start - end)
279 (72 - 350)478 (79 - 556)
definitionCHROMAT_FILE: MSMg01no324_c05.b1 PHD_FILE: MSMg01no324_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:22 2005CHROMAT_FILE: MSMg01no324_c05.g1 PHD_FILE: MSMg01no324_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTTTACTTTCACTTCAAATTGTGTCCCCAAATCTGCCTGCTTTTC
ATCACCTCCTGTTCAAACCATCTTCACACAGTCACTGCCCGGACATCACT
TTCCTGATACCCTCCACTCTGGTTGGATCTCCAGTCCATGTGGCAGGGGT
TTGGTTTCATGGCTGGTGATTGGGGGAAATCAGTATGTAACACTCTTTGC
TCTGAGAGGGCTAACGTATCCACCAGTATCCTAAAGGCACTAGAAACAGC
TTAAGCAGCCCCATATATCCTCCCAGCTGTTCCAAGATATAGTGCTGTGG
AGTTTTGCTTCTCGGAGAAACGCCCCCTCTAAAAAATCCCCATTGTTGTC
GAACCCAAAAGTGTTGTTGGCGCCCCCCCTCTTTTTCTTATAATAAAAAA
AACTTTTTTTATTGGGTCCCGTAACAGGGGTCCCTCCCCAAAAACCTGAA
AGGGGGTCGGGTATCNCAATGAAAATCTGGTTTTTCGCCACTCATTTCCT
TCACCTATATTTCCCAAACCTTATAACCTGCAAAAAACCTATGAATGGCC
CGAATTTTTTCCCCTCCTCTTGGTACCCCACTATTCATCCACCTCACATC
ACTTTTCAGAGTCTCTACTTTCTTTCTTCCCTCTCCACCTTTTTACCTTT
CATTTCCTCCCATTTTTTATATACTAACTATTTCGTAATAATATTTTTAT
TTTACATTTTCCATCTCTCCATCGTAATCTATACTTAATAACTACAAGGA
CTTTCT
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATGCACGGTCACTGCTG
CTTTGATTTCAAGGCAGCAATAGGGTTGTCATACATAGAAGACAGCATCA
TGCAACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAC
ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTC
ACCATCCTGGCTAAGTTTATGTCAACCTGACACAAGTTAGAGCCATTAGA
GAGGAAGAAATCTTAGTTGGGGAAAATGCCTCCCTAAGATCCAGCTGTAG
GGTGTTTTCTTTGTTAGTTATTGTTGGCGGAGGGTCCGGCACATTGTGGG
TAGTGCCATCCCTGGGCTCGCCCCCCTGGGTTCTACAAGAAAGCAGGCTA
AACAAGCCATGGAAAGCAAGCAACACTCCTCCATGTCCTCTAAATCAGCT
GCTGCCTCCAGGTTCCTGCCCTGTTTGAGTTTCTGTTCTGACTTCCTTCG
ATGATGAACAGTGATGTGGAAGTGTAAGCCAAATAAGCCCTTTCCTCCTC
CCCAACTTGCTATTGGGGCTTCATTGCAGCAATATGAACTCTGACTAAGA
CACACATTTACAGAGAGCCACCGCTCGCTATCTTCAGGGAACTGATTCCA
GGAACACCCCCGTCTCTATCATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_c05.b1 MSMg01no324_c05.b1 CHROMAT_FILE:
MSMg01no324_c05.b1 PHD_FILE: MSMg01no324_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:22 2005
         (279 letters)



>mm_chr6_91353014_91353692
          Length = 679

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtgtccccaaatctgcctgcttttcatcacctcctgttcaaaccatcttcacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aattgtgtccccaaatctgcctgcttttcatcacctcctgttcaaaccatcttcacacag 417

                                                                       
Query: 61  tcactgcccggacatcactttcctgataccctccactctggttggatctccagtccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcactgcccggacatcactttcctgataccctccactctggttggatctccagtccatgt 357

                                                                       
Query: 121 ggcaggggtttggtttcatggctggtgattgggggaaatcagtatgtaacactctttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggcaggggtttggtttcatggctggtgattgggggaaatcagtatgtaacactctttgct 297

                                                                       
Query: 181 ctgagagggctaacgtatccaccagtatcctaaaggcactagaaacagcttaagcagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 ctgagagggctaacgtatccaccagtatcctaaaggcactagaaatagcttaagcagccc 237

                                               
Query: 241 catatatcctcccagctgttccaagatatagtgctg 276
           |||||| |||||||||||||||||||||||||||||
Sbjct: 236 catatagcctcccagctgttccaagatatagtgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)