BAC Information

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BAC

Clone NameMSMg01-324D02
Chromosome6 (Build37)
Map Location 106,628,321 - 106,628,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043350, Cntn4
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324D02.T7 (MSMg01no324_d02.b1)MSMg01-324D02.TJ (MSMg01no324_d02.g1)
ACCAG442412AG442413
length751765
length of high quality
(start - end)
375 (47 - 421)342 (80 - 421)
definitionCHROMAT_FILE: MSMg01no324_d02.b1 PHD_FILE: MSMg01no324_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:26 2005CHROMAT_FILE: MSMg01no324_d02.g1 PHD_FILE: MSMg01no324_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAACCGCGGA
ATTCATTTGTAGATTCACAAAGCCACCAGCCAGTATCTTTGCCAGGAGTC
TTTCTGCCACGGATATCGAAGTTTTCTGGGCCTCCCCTATTGGAAAGAAC
AGAGGACGGATTCAAGGTTATGAGGTAAGATAGAGACCAGTACATTTGAT
CTATATCTCTTGGTGAGACCTCTAAGGCACGTTCACTGATGGGAGAAGAC
CCACATCGTCTTACACAGGTATCTGTTCTAGAGGTCTAGTTCTACGGTAT
TGTTAATAGAAGCACTGAAGAATCTACTGTGATACCACCCTTTACCTATG
TTTATGCTTAAGTTTATTATTATATTTCTCTCTCTTTCCGTACCTAAAGA
TTTGCAATACAGTTGGTAAACAGAGCTTATATGCCATATGCCCGTAGGGA
TAGGGAGATTGCTTTAGGAGTCAAGTGTGTTCATTGCTCTTGCAGAGGAT
CTGAGTTCCGTTTCCAGCATCCTTCCTAGGGAATTCATCAACTGCCTGTA
ACTCCAGCTCCTGGGGAATCAATGATTTCTTCTGGTCTTTGTGGTTATCT
ATATTCTCATATACCCACTCATGCTCCTACTCCCCTTATTTTTTTTAAAA
ATAATTCCTTACAAATATTTCTTTTCAATATTATTACGCTTACAATGACC
TGTTCTCCTAACCATTGCGCTAGGAATTGACTGTATATAGCCCTTGTATG
T
CCCCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTGATGGAAAATCTAGGT
AGGCAAACTAGAGAGCCACCATCACCAACAGGCTTTAAGTGATAGAAGAG
AGAATCTCGGGCATAGATATAAAACAGAAGAAATTGATATATCAGTCAAA
GAAAATGACAAATCTAAAAAGTTCTGGATGTAAAACATTCAGGAAATCTG
GGAAAATAAAAAATGACCAAACCCAAGAGTAAGGGGAGGAGAAGAAGATT
CCCAGCTCAAATGCTCAGCAAAATATTTTCATTATAATCATAGAAGAAAA
TTTTCTTAATCTAAACAAAGAGATACCTACAAATGTAAAAGAAGTTTACA
GAGCACCAACCAAATTGGACAAAAAAAAAAAAAGAAGAATCTCCCTGCCA
TATAATAATTAAAACAAATGTACAGAAAAAAGAAAGACTACTAAAAGCTG
CAAGGATAAAAAATCAAATAACATGTAAAGGCAGAGCTGTTAGAATGGTA
TCCAATATTTAAACAGAGATTCTCAAGGCAAGAATAGTCCTGGGCAGATA
TCTTTCAGAATCTTAGATACCACAGATGCCAGCCCAGATTTTTCAATCAC
CATAGATGGAGACAACAATATATTTCATGACAAACCCCATTTTAAACAAT
ATCCACAAATCTTAGCCTACAAAATATTCTAGAAGGAAAACTCCAACCCT
AGGAGGTTTAACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_d02.b1 MSMg01no324_d02.b1 CHROMAT_FILE:
MSMg01no324_d02.b1 PHD_FILE: MSMg01no324_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:26 2005
         (375 letters)



>mm_chr6_106628119_106628894
          Length = 776

 Score =  613 bits (317), Expect = e-180
 Identities = 359/373 (96%), Gaps = 1/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcatttgtag-attcacaaagccaccagccagtatctttgccaggagtctttctgc 61
           |||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcatttgtagaacccaccaagccaccagccagtatctttgccaggagtctttctgc 262

                                                                       
Query: 62  cacggatatcgaagttttctgggcctcccctattggaaagaacagaggacggattcaagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacggatatcgaagttttctgggcctcccctattggaaagaacagaggacggattcaagg 322

                                                                       
Query: 122 ttatgaggtaagatagagaccagtacatttgatctatatctcttggtgagacctctaagg 181
           |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 323 ttatgaggtaagatagagaccagtgcatttgatctacatctctcggtgagacctctaagg 382

                                                                       
Query: 182 cacgttcactgatgggagaagacccacatcgtcttacacaggtatctgttctagaggtct 241
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 383 cacgttcactgatgggagaagacccacattgtctgacacaggtatctgttctagaggtct 442

                                                                       
Query: 242 agttctacggtattgttaatagaagcactgaagaatctactgtgataccaccctttacct 301
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 agttctacggtactgttaatagaagcactgaagaatctactgtgagaccaccctttacct 502

                                                                       
Query: 302 atgtttatgcttaagtttattattatatttctctctctttccgtacctaaagatttgcaa 361
           || ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 503 atttttatgcttaagtttattattatatttctctctctttctttacctaaagatttgcaa 562

                        
Query: 362 tacagttggtaaa 374
           |||||||||||||
Sbjct: 563 tacagttggtaaa 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)