BAC Information

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BAC

Clone NameMSMg01-324H20
Chromosome6 (Build37)
Map Location 77,353,150 - 77,552,596
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324H20.T7 (MSMg01no324_h20.b1)MSMg01-324H20.TJ (MSMg01no324_h20.g1)
ACCAG442625AG442626
length739749
length of high quality
(start - end)		694 (46 - 739)667 (83 - 749)
definitionCHROMAT_FILE: MSMg01no324_h20.b1 PHD_FILE: MSMg01no324_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:49 2005CHROMAT_FILE: MSMg01no324_h20.g1 PHD_FILE: MSMg01no324_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,353,150 - 77,353,839)(77,551,930 - 77,552,596)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAGTGTGATCTTGATCAAATTATGTCCTGTGGGCATGATCTAA
AATGAGGATTCTTTACAGCAGTTTTGTTCTAGAGTTGTGGTAATGTAACC
TGAAGTGTTACATGATTACAGGTGTACAGTTTTATATAGTAAGTGACCTA
GCAAAAATGCAATAATAAGCATGGTATATTACAAGGCTAATTTTGTCTTA
AATGTCTTCATCCATGGGTTACATTGAGGAAAAGCTGGTTTATCTGTTTC
CTCTGCAGGCAGTTCAAAGAATTCGCAGTATTAAGGGAATAAATAAATGG
ACTTTGGAAGATTTTTCTTTTCTGCTTGGACATGGCCTTGTGAAGAATCT
CAAGGCTGTTTTCTGTGTCCACAAGGATCAGGAGTTAAAGGCATTTCTTT
TAGACCCATGCAAGTCAAACAAGTAAAGCATCAAAAGCACATAGCCTTGG
AATTGCTTGAGCTTATAGAGGAAAAAACCCCACAAACAGCAATCTATGTG
TACTTGGTGCACCAGTCTCGTTACTTAGACTTCTGATCTCTGTGGGCTTT
ATTGGCATCAGTCCCTGGAACATTAATAATGTTTACAGTTGGCAATAAGT
TGGACAAACCATGCATTGAACTTTAAATTTGGCCTATTATTTCTCCATCT
CTTCATTTAAATTTAAACTGCTTTCAAAATACTCTGGTA

NNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAATATCATCCTACT
TGTAGTACCCCATTGGCATCCAAAACAACCCAAAGGTGCCAGACTTACCA
AGTGACATGGAATGCAGATGGAGATTGCAGAGGCCCACTGGGCACAAACT
GATGGAAAGACCAGTCTTCCTGGGGGATGGGTTGTGCTTTGCACATGTAG
ATATTGTTGAGCTCAGAAGGAACTCAGAATGACATCGTTGTTTCCTAGAT
ATGGTTATAAATGTATGTGTTTAATTACTATTTACACGTGTGATTTGAAA
ATGCCAGAGAAATTGTGCACTTTTAAAAAGATCTGATAAGAGAACAGTCT
ATGTATGAAGAAGACACCAGAGACTAAAGCTGGGATCTTAAAGCAGGTAG
GGATAGGAAGGAAAAGGGGTTTTCAATGGCCCTAAGAAAGTTTTCAGTTA
GCAAGGCCTTGTGTTGTTCTATTTAGCTTCAGAACCATCCTCAAGTGAAA
CTGTTCTTTAAAACTTCCAACCCTGATAGATTGCCATTATAGTACACATT
GGGTCTAATGAGTAGAGGCTCTTTCTCAAAAAAGAGGCATGGTCTGAACA
TGTAAGTTGGTATTGCTGCTGTCCATGTTATTGGTATAAATTATTCCGAA
TTATAAGGAGCCCATAAACCTTCCAAAGGAAGCTGTTTTATGCACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_h20.b1 MSMg01no324_h20.b1 CHROMAT_FILE:
MSMg01no324_h20.b1 PHD_FILE: MSMg01no324_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:49 2005
         (694 letters)



>mm_chr6_77352946_77354039
          Length = 1094

 Score = 1311 bits (678), Expect = 0.0
 Identities = 687/690 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaagtgtgatcttgatcaaattatgtcctgtgggcatgatctaaaatgaggat 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcctaagtgtgatcttgatcaaattatgtcccgtgggcatgatctaaaatgaggat 264

                                                                       
Query: 65  tctttacagcagttttgttctagagttgtggtaatgtaacctgaagtgttacatgattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttacagcagttttgttctagagttgtggtaatgtaacctgaagtgttacatgattac 324

                                                                       
Query: 125 aggtgtacagttttatatagtaagtgacctagcaaaaatgcaataataagcatggtatat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 aggtgtacagttttatatagtaagtgacctagcaaaaatgcaataataagcatggtgtat 384

                                                                       
Query: 185 tacaaggctaattttgtcttaaatgtcttcatccatgggttacattgaggaaaagctggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaaggctaattttgtcttaaatgtcttcatccatgggttacattgaggaaaagctggt 444

                                                                       
Query: 245 ttatctgtttcctctgcaggcagttcaaagaattcgcagtattaagggaataaataaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatctgtttcctctgcaggcagttcaaagaattcgcagtattaagggaataaataaatg 504

                                                                       
Query: 305 gactttggaagatttttcttttctgcttggacatggccttgtgaagaatctcaaggctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gactttggaagatttttcttttctgcttggacatggccttgtgaagactctcaaggctgt 564

                                                                       
Query: 365 tttctgtgtccacaaggatcaggagttaaaggcatttcttttagacccatgcaagtcaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttctgtgtccacaaggatcaggagttaaaggcatttcttttagacccatgcaagtcaaa 624

                                                                       
Query: 425 caagtaaagcatcaaaagcacatagccttggaattgcttgagcttatagaggaaaaaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagtaaagcatcaaaagcacatagccttggaattgcttgagcttatagaggaaaaaacc 684

                                                                       
Query: 485 ccacaaacagcaatctatgtgtacttggtgcaccagtctcgttacttagacttctgatct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacaaacagcaatctatgtgtacttggtgcaccagtctcgttacttagacttctgatct 744

                                                                       
Query: 545 ctgtgggctttattggcatcagtccctggaacattaataatgtttacagttggcaataag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgtgggctttattggcatcagtccctggaacattaataatgtttacagttggcaataag 804

                                                                       
Query: 605 ttggacaaaccatgcattgaactttaaatttggcctattatttctccatctcttcattta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttggacaaaccatgcattgaactttaaatttggcctattatttctccatctcttcattta 864

                                         
Query: 665 aatttaaactgctttcaaaatactctggta 694
           ||||||||||||||||||||||||||||||
Sbjct: 865 aatttaaactgctttcaaaatactctggta 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_h20.g1 MSMg01no324_h20.g1 CHROMAT_FILE:
MSMg01no324_h20.g1 PHD_FILE: MSMg01no324_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:49 2005
         (667 letters)



>mm_chr6_77551730_77552796
          Length = 1067

 Score = 1197 bits (619), Expect = 0.0
 Identities = 655/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaatatcatcctacttgtagtaccccattggcatccaaaacaacccaaaggtgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 cagaaatatcatcctacttgtagtaccccattggcatccaaaacaacccaaaggtgccag 808

                                                                       
Query: 61  acttaccaagtgacatggaatgcagatggagattgcagaggcccactgggcacaaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acttaccaagtgacatggaatgcagatggagattgcagaggcccactgggcacaaactga 748

                                                                       
Query: 121 tggaaagaccagtcttcctgggggatgggttgtgctttgcacatgtagatattgttgagc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tggaaaggccagtcttcctgggggatgggttgtgctttgcacatgtagatattgttgagc 688

                                                                       
Query: 181 tcagaaggaactcagaatgacatcgttgtttcctagatatggttataaatgtatgtgttt 240
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcagaaggagctcagaatgagatcgttgtttcctagatatggttataaatgtatgtgttt 628

                                                                       
Query: 241 aattactatttacacgtgtgatttgaaaatgccagagaaattgtgcacttttaaaaagat 300
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aattaatctttacacgtgtgatttgaaaatgccagagaaattgtgcacttttaaaaagat 568

                                                                       
Query: 301 ctgataagagaacagtctatgtatgaagaagacaccagagactaaagctgggatcttaaa 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctgataagagaagagtctatgtatgaagaagacaccagagactaaagctgggatcttaaa 508

                                                                       
Query: 361 gcaggtagggataggaaggaaaaggggttttcaatggccctaagaaagttttcagttagc 420
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 acaggtagggataggaaggaaaaggggttttcaatggccctaagaaagtgttcagttagc 448

                                                                       
Query: 421 aaggccttgtgttgttctatttagcttcagaaccatcctcaagtgaaactgttctttaaa 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 447 aaggccttgtgttgttctatttagcttcagaaccatcctcgagtgaaactgttctttaaa 388

                                                                       
Query: 481 acttccaaccctgatagattgccattatagtacacattgggtctaatgagtagaggctct 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acttccaacactgatagattgccattatagtacacattgggtctaatgagtagaggctct 328

                                                                       
Query: 541 ttctcaaaaaagaggcatggtctgaacatgtaagttggtattgctgctgtccatgttatt 600
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 327 ttctcaaaaaagaggcatggtctgaacgtgtcagttggtattgctgctgtccatgttatt 268

                                                                       
Query: 601 ggtataaattattccgaattataaggagcccataaaccttccaaaggaagctgttttatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggtataaattattccgaattataaggagcccataaaccttccaaaggaagctgttttatg 208

                  
Query: 661 cacctta 667
           |||||||
Sbjct: 207 cacctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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