BAC Information

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BAC

Clone NameMSMg01-324K14
Chromosome6 (Build37)
Map Location 119,291,315 - 119,463,291
singlet/doubletdoublet
Overlap geneCacna2d4, Adipor2, Wnt5b, Fbxl14
Upstream geneBms1, Zfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Lrtm2
Downstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K14.T7 (MSMg01no324_k14.b1)MSMg01-324K14.TJ (MSMg01no324_k14.g1)
ACCAG442753AG442754
length729768
length of high quality
(start - end)		625 (46 - 670)163 (79 - 241)
definitionCHROMAT_FILE: MSMg01no324_k14.b1 PHD_FILE: MSMg01no324_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:02 2005CHROMAT_FILE: MSMg01no324_k14.g1 PHD_FILE: MSMg01no324_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,291,315 - 119,291,936)(119,463,129 - 119,463,291)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGGACGCCAGTGCTGTTCCTGCTATAGCACCCGTTGTTAAAT
CTGGGTCCTGATGTGAAAAGAAACCCAAAATCCACATTGGAACCTTCCCT
TTGCAAGTCCAGCATTTCTCTCTGAGGCAGTACTCCATTTGGACAAAGGG
CAACAGTAAATGTATCTGTTAGGAAAGGTGTTCTCAAGGTGGCATACAGC
TAAGGGGACTCTTGCCTTCTAGTCCATTTCCCTAACAGGAGGGCAACAGT
CCCAAATAGAGTCCTCTCACTTTAAGTAGATTCCCAGAAGTCCTCATCTG
AGCTTTGCACCATTTCATTGGCCAGCCCTTAGTACAAGGGTTTCTGGGAA
GTGTAGTCCTTTGTGGACCACATTGCTAACTCTGTTGCAGTCAAACTAAA
GAAAGGAGAATGGGCATGTCCTGCTGAAACATACGGTGTTCTAGGAGATG
GAGTTTTGTTTGCAGAGGCAGAAGTATTTTTCAGGGTCCAAGATGTGCTT
TCTTACTGTCACACCTCCCCCCTCAGAACTGGTCAACTAAACAACAGGGT
TGGTGATCAATAAGCCTACCGTTAAGGGAGAGAATGAGGTGGGCTTACAG
GAGTTTGGGTCAACACCCTTATAGACCACTAAGTTTCAGGTTTCACACAC
ACACACACACACACACACACACACAACCT

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATCTAACCGGAAGCCAGAT
GGGGTGGAGACGCTCCCTAGTGCCTCTGGGATAGGGGTATCCAAGTGTTG
GGCTTCGTGATATACAATCGACCACATTTATAGTGAATAATTCAGAAGTC
ATTTGGCATTCGATTATTGATGCTGGAGGCAAACAGATACAATATAGACC
GAATCGCACCACAAAATCCCGAACACCATCTATATCTTTATCTAGGTCAC
TGCTAAACTTTGGCTAATTAAGTAGATCCTGGCTGCGTTTGCATTTTAAA
ACGTGTCTTCATTGCACTGATATATGCTTATTGTATTCTGACCCATATTA
CCCTGTCATTTATAACCCCCACTTTTCTTTTTAAGTTAATGTGCCTCATT
TATGTACCCCTTTCCGTTTCATGTATCGACTGTCCATTCGAGAGTATTGA
GTCACCCTTTCCCCGTGGTTTACCTTTGCCCGCAGCCACTCTCCCTCTTT
TCAGCCCGATTTCCCCTCCCTTTTCTTCCCCTTTTTTCACTATATGGCTT
GCTTTTCCCACCTTTTTGTTTTTTGCCTGTCCTATTAGTGTCGCCGGTTT
CTGTACCCACTCAACCAGAACGTCTTTTATCGCCCTTTTTCTCCCCCTTC
CACCCACTCGCTTTCCAGCCTTTTATACTTTTCCTCTTTCTCATTGACTT
ATTCCCACGTTTTTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k14.b1 MSMg01no324_k14.b1 CHROMAT_FILE:
MSMg01no324_k14.b1 PHD_FILE: MSMg01no324_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
         (625 letters)



>mm_chr6_119291112_119292136
          Length = 1025

 Score = 1118 bits (578), Expect = 0.0
 Identities = 611/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgggacgccagtgctgttcctgctatagcacccgttgttaaatctgggtcc 63
           |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgggaggccagcactgttcctgctatagcacccgttgttaaatctgggtcc 263

                                                                       
Query: 64  tgatgtgaaaagaaacccaaaatccacattggaaccttccctttgcaagtccagcatttc 123
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgatgtgaaaagggacccaaaatccacattggaaccttccctttgcaagtccagcatttc 323

                                                                       
Query: 124 tctctgaggcagtactccatttggacaaagggcaacagtaaatgtatctgttaggaaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctgaggcagtactccatttggacaaagggcaacagtaaatgtatctgttaggaaagg 383

                                                                       
Query: 184 tgttctcaaggtggcatacagctaaggggactcttgccttctagtccatttccctaacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttctcaaggtggcatacagctaaggggactcttgccttctagtccatttccctaacag 443

                                                                       
Query: 244 gagggcaacagtcccaaatagagtcctctcactttaagtagattcccagaagtcctcatc 303
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagggcaacagtccctaatacagtcctctcactttaagtagattcccagaagtcctcatc 503

                                                                       
Query: 304 tgagctttgcaccatttcattggccagcccttagtacaagggtttctgggaagtgtagtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagctttgcaccatttcattggccagcccttagtacaagggtttctgggaagtgtagtc 563

                                                                       
Query: 364 ctttgtggaccacattgctaactctgttgcagtcaaactaaagaaaggagaatgggcatg 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ctttgtggaccacattgctaactctgttgcagtcaaactaaagaaaggagaatgagcatg 623

                                                                       
Query: 424 tcctgctgaaacatacggtgttctaggagatggagttttgtttgcagaggcagaagtatt 483
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctgctgaaacatacagtgttctaggagatggagttttgtttgcagaggcagaagtatt 683

                                                                       
Query: 484 tttcagggtccaagatgtgctttcttactgtcacacctcccccctcagaactggtcaact 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttcagggtccaagatgtgctttcttactgtcacacctcccccctcagaactggtcaact 743

                                                                       
Query: 544 aaacaacagggttggtgatcaataagcctaccgttaagggagagaatgaggtgggcttac 603
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 aaacaacagggttggtgatcaataagcctaccgttaagggagagaatggggtgggcttac 803

                                 
Query: 604 aggagtttgggtcaacaccctt 625
           |||||||||||||| |||||||
Sbjct: 804 aggagtttgggtcagcaccctt 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_k14.g1 MSMg01no324_k14.g1 CHROMAT_FILE:
MSMg01no324_k14.g1 PHD_FILE: MSMg01no324_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
         (163 letters)



>mm_chr6_119462929_119463491
          Length = 563

 Score =  292 bits (151), Expect = 7e-84
 Identities = 160/163 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatctaaccggaagccagatggggtggagacgctccctagtgcctctgggataggggt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 363 actatctaaccggaagccagatggggtggagacactccctagtgcctctgggataggggt 304

                                                                       
Query: 61  atccaagtgttgggcttcgtgatatacaatcgaccacatttatagtgaataattcagaag 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atccaagtgttgggctttgtgatatacaatcgaccacatttatagtgaataattcagaag 244

                                                      
Query: 121 tcatttggcattcgattattgatgctggaggcaaacagataca 163
           |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 243 tcatttggcattcgattattgatgctagaggcaaacagataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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