BAC Information

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BAC

Clone NameMSMg01-325F02
Chromosome6 (Build37)
Map Location 8,042,611 - 8,042,853
singlet/doubletsinglet
Overlap geneCol28a1
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325F02.T7 (MSMg01no325_f02.b1)MSMg01-325F02.TJ (MSMg01no325_f02.g1)
ACCAG443237AG443238
length679720
length of high quality
(start - end)
243 (46 - 288)487 (79 - 565)
definitionCHROMAT_FILE: MSMg01no325_f02.b1 PHD_FILE: MSMg01no325_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:49 2005CHROMAT_FILE: MSMg01no325_f02.g1 PHD_FILE: MSMg01no325_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTAATCCCGAGGGGGGCGGAATTCCTGANATTACTACAAAAGTAGCT
AATTACATGCTAATTGCCTCTTCTCAGGGATGAAAAAGAATTCCAAATTA
AGAGATAATCTGATTCCAAAGTGCAAGGTAAACTCTTACTCTTTAGATTA
TTCTGTCTCCATCTTTTTCAGGTTCTAGAACTTGAACCCACTGTGGGAAT
ACCGGTGAGAATGCAAGGCCATTAGTCCAGAGAATGTTGCCTATTTGCAC
TGCTAGAATATGCTCTCAATAATTAAAATATAAACAACAAATAAATAAAG
GCTATGCAAATAAAAGCATCCATCATAAAGCAAAAAGAATGCTAGACTAA
GTCATTAATAATATCAGTATTATTTGGCATAGGATGTTCTGATTTTCAAG
TGAATTCCATCTGTCCTTTTGCAGTCATTGAACATTAATCATAAACAACA
ATTATACCATAAGTATGCTAAACATCTCTGTCATTTAGAAAAGTAGCTTA
GGACCAGGTGAGCCTTGTCCTGTGGGTCCTTGAGGACCACGCGGACCAGA
TGGGCCTTGGATCCCGTTCAGAAAGAAGGTTTTAAATGTTAGTGGAATTA
ACACATGGAGAGCAGTCTTGTGTCTTTTAGAGTGAAGGTTTAGCTCCCCA
TAACAAAATGACTGGACAGCTGGAAACTT
NTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAAC
AGTCTGTTTTACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGT
TCTGAATCCAGGCTGGATCCTTCTCAACAGTCTGTTTTACGGGAACACTT
CATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCG
CCGGTGATGGTAACCGTCCCAGGTTTTCTTGTCCCAGGTCTTCTCGTCCC
GGGTTTTCTCGTCCCGGGTTTCGGCACCAACTCTTACACGCGTTCACCCA
ACCGGCCAGGAAGACGCAACAAACCGGAATCTTCTGCGGCAAAACTTTAT
TGCTTACATCTTCAGGAGCAAGACCGCAAGAGAGCAAGAACAAGAAAGCA
AGAAAAAGAACAAGAACAAGAAAGCAAGAGCAAGAGCAAGAGAGAGCAAG
AAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAGAAAGAACA
AGAACAAGAAAGCAAGAGCAAGAGAGAGAAAAAGCAAGAACAAGAGAGAG
AAAAAGCAAGAACAAGAGAGAGAGAAAGCAAGAACAAGAGAGAGAAAAAG
CTAGAACAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAAAAAGCCTGAC
CAAGATAGAGAAAAAGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_f02.b1 MSMg01no325_f02.b1 CHROMAT_FILE:
MSMg01no325_f02.b1 PHD_FILE: MSMg01no325_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:49 2005
         (243 letters)



>mm_chr6_8042411_8043054
          Length = 644

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagctaattacatgctaattgcctcttctc-agggatgaaaaagaattccaaattaagag 59
           ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 201 tagctaattacatactaattgcctcttctcaagggatgaaaaaggattccaaattaagag 260

                                                                       
Query: 60  ataatctgattccaaagtgcaaggtaaactcttactctttagattattctgtctccatct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatctgattccaaagtgcaaggtaaactcttactctttagattattctgtctccatct 320

                                                                       
Query: 120 ttttcaggttctagaacttgaacccactgtgggaataccggtgagaatgcaaggccatta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 ttttcaggttctagaacttgaacccactgtgggaataccggtgagaatgcaaggccacca 380

                                                                       
Query: 180 gtccagagaatgttgcctatttgcactgctagaatatgctctcaataattaaaatataaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccagagaatgttgcctatttgcactgctagaatatgctctcaataattaaaatataaa 440

              
Query: 240 caa 242
           |||
Sbjct: 441 caa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)