BAC Information

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BAC

Clone NameMSMg01-325M06
Chromosome6 (Build37)
Map Location 145,948,839 - 145,948,998
singlet/doubletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M06.T7 (MSMg01no325_m06.b1)MSMg01-325M06.TJ (MSMg01no325_m06.g1)
ACCAG443569AG443570
length742740
length of high quality
(start - end)
159 (115 - 273)89 (429 - 517)
definitionCHROMAT_FILE: MSMg01no325_m06.b1 PHD_FILE: MSMg01no325_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:20 2005CHROMAT_FILE: MSMg01no325_m06.g1 PHD_FILE: MSMg01no325_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAGCTATCCAAATCGGTACTCTGTGATGAAGAGAAATTTTTG
CTAGCTCTAAAAAGCTGTCTCTGATGAATCATAAACCTGCTTGTATATTC
TAACACAATTGCTAGTGGCGAAAACTAAGCTGACGGTAGAGATGGTGGTG
GGGACAGTTTAGAAGTGCCCCCAATCCTAAATACTTCACAAGTTTCACCT
TGGTCTTCAAAACCACCCTGTGTGGGAGGGGCTCTCGGTGTCCCATGTCA
CAGACAAGGACCCACACAAGATGCTAACTGCACTCCAGGATCAGAGTCAG
TATAAGTAGCGGATGAGTAACCCTCTCCAGGCACCTGGGCCTTCCTTGAC
CTCTGGTTATGCTGATCCCCCCACCCAGGGCTCAGCTTTCAGAAAGTATG
CACACTGAATACTACATTTCTGACTACTTAGTATCTTTACTCATTGCGGG
AATGGAGCGCTTGACAAAGGCACCTTAAAGGGGGAAGGAGTTGCTTTGAA
TCACGGTTTGGAGATAGTATCCATGGCTGGAGGAGCTGGACGAATCGGCT
CTTGACGCGTCTGCCCTCAGTAATCACAGATAGATGGCGGCTAGTGCTCG
GCTTGCTCTCTCCTTGTTATTCAGACTGGTTCCCAGCCCTCGCGGAGGTT
ACTGTCCGGATGCCGTTAGTATCTTTTCCTTGTCATTGCCCN
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTCCTGTCAGTGAGAACCCA
TCTCTTCTCAAGCAGCTTCCATGTGGAAAGCACCAGCTGGATTTTCTGTC
TTTCACAGAAGGCTGGCTCTTTTCATCTTATCAAGGCTGACACACACTTC
CATGCTAGCCCGCATCACAGGAAGATCATGAGCCCAGCTACCTCTAACAG
TGATGAGAACACTTAAAGCACGCTTGCTAATGCTTCTTCAGTATGAGGAC
ACAGCACGAGGGCTGGCAGCTAGCTGACAAGAAGGAACAGTAAAAGGGAC
AGGGCTTAAAAAAGGAGCGTGACCTTTGGCCTTTAGAGGGTTAAGACTGC
GCTATGTGCAGGACTTATCACCCACCGGTCACCAGGCCATCTCCCAGCAT
GCAAATAGCCATTCTAGGCATAGCTGAGTAAGATCCTACCACACTGCTTT
GGTGCAATGATCAACCCTCACTGTCCTCTTGACTAGATTTAGCATCACTT
ATGAGACCATTTGAGGCACACCCCTAGCTAGGTACGCTGTGGCGTTTCTC
CAGAGAGGATCAGCTGACCAATGTAAGACCCATTATGAGTATCAGTTTAA
TGCAAACCCATGAAGTGAACTGGGGGCCCAATAAAGGAATATAAAAAGAA
ATGCTGTCTAACAGGCATTGCAGGTAAGTCTGCCTTTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m06.b1 MSMg01no325_m06.b1 CHROMAT_FILE:
MSMg01no325_m06.b1 PHD_FILE: MSMg01no325_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:20 2005
         (159 letters)



>mm_chr6_145948639_145949198
          Length = 560

 Score =  263 bits (136), Expect = 4e-75
 Identities = 154/160 (96%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctctgatgaatcataaacctgcttgtatattctaacacaattgctagtggcgaaaa 60
           |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctgtttctgatgagtcgtaaacctgcttgtatattctaacacaattgctagtggcgaaaa 301

                                                                       
Query: 61  ctaagctgacggtagagatggt-ggtggggacagtttagaagtgcccccaatcctaaata 119
           |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 300 ctaagctgacggtaaagatggtgggtggggacagtttaaaagtgcccccaatcctaaata 241

                                                   
Query: 120 cttcacaagtttcaccttggtcttcaaaaccaccctgtgt 159
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttcacaagtttcaccttggtcttcaaaaccaccctgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 560
Length adjustment: 8
Effective length of query: 151
Effective length of database: 552
Effective search space:    83352
Effective search space used:    83352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)